Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g2620 ATGTTTTGGTTGAGACCCATTTTGCGTTCACAATCAAGATCTTCAATTTGGGTGTTAAACCATTCTTCCAATGGATATTGTAATTCCTTTTCAACTTCCTCAGCAGCCGCAATTCAAGCTGAGAAAACCATAAACAATGGCCCTAGAAACGATTGGACAAAAGAAGAAGTCAAATCTATCTATGATTCTCCCATTCTCGATCTTCTCTTCCATGGGGCTCAGGTTCATAGACATGCTCATAACTTTAGGGAAGTGCAACAATGTACTCTTCTATCTGTCAAAACAGGTGGGTGTAGTGAGGATTGTTCTTATTGTCCTCAATCCTCTAGATATGATACAGGACTCAAAGGTCAAAGACTTATGAACAAGGAGGCTGTTCTCCAGGCTGCAGTTAAGGCAAAAGAGGCTGGGAGTACTCGCTTTTGTATGGGCGCTGCATGGAGGGATACAATAGGAAGAAAGACCAACTTCAACCAGATACTTGAATACGTAAAAGAAATAAAGGGTATGGGGATGGAGGTGTGCTGCACCCTTGGCATGCTGGATAAAAATCAGGCTGGTGAACTCAAGAAGGCGGGTCTTACTGCCTATAATCACAATCTTGACACTTCAAGGGAATACTATCCAAACATCATCACCACAAGAAGTTATGATGAGCGCCTTCAAACCCTTGAGTATGTTCGTGATGCAGGGATCAATGTCTGTTGTGGAGGAATTATCGGACTTGGAGAAGCAGAAGAAGACCGTATAGGTTTGTTGCATACATTATCAACACTTCCCACACATCCAGAAAGTGTTCCTATTAATGCACTTGTCGCCGTAAAGGGAACCCCTCTTCAGGATCAGAAGCCTGTTGAAATATGGGAGATGATTCGCATGATTGCAACAGCGCGTATCACAATGCCAAAAGCAATGGTGAGGTTATCAGCCGGCAGAGTTCGGTTCTCCGTGCCTGAGCAGGCATTGTGTTTTCTAGCCGGTGCCAATTCTATCTTTGCTGGTGAAAAGCTTCTCACAACTGCTAACAATGATTTTGATGCTGATCAACTCATGTTTAAAGTTCTTGGTTTGCTTCCAAAAGCTCCAACCTTAGATGAAGATGAGGCAGAAAATTATAAAGAAGCTGCTTCTTCTAGTTGA 1140 0.4281 MFWLRPILRSQSRSSIWVLNHSSNGYCNSFSTSSAAAIQAEKTINNGPRNDWTKEEVKSIYDSPILDLLFHGAQVHRHAHNFREVQQCTLLSVKTGGCSEDCSYCPQSSRYDTGLKGQRLMNKEAVLQAAVKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKEIKGMGMEVCCTLGMLDKNQAGELKKAGLTAYNHNLDTSREYYPNIITTRSYDERLQTLEYVRDAGINVCCGGIIGLGEAEEDRIGLLHTLSTLPTHPESVPINALVAVKGTPLQDQKPVEIWEMIRMIATARITMPKAMVRLSAGRVRFSVPEQALCFLAGANSIFAGEKLLTTANNDFDADQLMFKVLGLLPKAPTLDEDEAENYKEAASSS* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g2620 379 PIRSF Biotin_synth 32 365 IPR024177 -
Tpr3g2620 379 Pfam Biotin and Thiamin Synthesis associated domain 267 357 IPR010722 -
Tpr3g2620 379 SFLD biotin synthase 45 364 IPR024177 -
Tpr3g2620 379 SMART BATS_2 267 359 IPR010722 -
Tpr3g2620 379 SUPERFAMILY Radical SAM enzymes 50 359 - -
Tpr3g2620 379 Pfam Radical SAM superfamily 94 251 IPR007197 GO:0003824|GO:0051536
Tpr3g2620 379 SFLD Radical SAM 45 364 IPR007197 GO:0003824|GO:0051536
Tpr3g2620 379 PANTHER BIOTIN SYNTHASE 31 377 IPR002684 GO:0004076|GO:0009102
Tpr3g2620 379 ProSiteProfiles Radical SAM core domain profile. 83 312 IPR007197 GO:0003824|GO:0051536
Tpr3g2620 379 TIGRFAM bioB: biotin synthase 60 357 IPR002684 GO:0004076|GO:0009102
Tpr3g2620 379 Hamap Biotin synthase [bioB]. 50 360 IPR002684 GO:0004076|GO:0009102
Tpr3g2620 379 CDD Radical_SAM 95 295 - -
Tpr3g2620 379 Gene3D Aldolase class I 49 361 IPR013785 -
Tpr3g2620 379 SMART MiaB 88 296 IPR006638 GO:0003824|GO:0051536
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g2620 K01012 - gmx:100808225 646.736