Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g2597 ATGAATAGCCTCATCCGATCCACTCTCAGAAACAAGACAGCTTCAGCTTTAGTATGTGCAGCAGTTCCCAGAAGTTTTCGGGGAAGTATTATTCAGGCTCCCTTATGGTCTAGGTCAAGTAGTTCAGAATCTTCTTTGGCTACGGATAATTCAACTTCAGATGTGAAAACTGACCAAGGGTTCAAGGGCCATGATATGCTTGCCCCTTTCACACCTGGGTGGCATACTACCGATGTGAATCCTTTGGTTATTGAAAAGTCTGAGGGAAGCTATGTATATGACATTAATGGGAAGAAATATCTTGACGCACTTGCTGGTCTATGGTGCACCGCTTTAGGGGGAAGCGAGCAGCGCCTTGTTGATGCTGCCACTGCACAATTGAAGAAGTTGCCATTTTACCATTCCTTTTGGAATCGAACCACAAAACCTTCATTGGATCTAGCCAAGGAGCTCCTAGAATTTTTTACAGCCAGAAAAATGGCTAAAGCTTTTTTTGTTAATAGTGGGTCAGAAGCCAACGACACTCAGGTCAAAATTGTATGGTATTATTTCAATGCCCTTGGAAAACCAAATAAGAAGAAATTCATAGCTCGGACTAAATCGTATCATGGTTCAACATTGATAGCAGCCAGTCTTTCGGGTCTTACAGCTTTGCATCAAAAGTTTGATCTGCCAGCTCCTTTTGTTTTGCATACTGATTGTCCACACTACTGGCGGTATCATCTTCCAGGTGAGACAGAGGAAGAATTTTCGACCAGATTGGCCAAGAATTTGGAGGAGCTAATTCTGAAAGAGGGACCAGAGACGATTGCTGCATTTATTGCAGAACCAGTGATGGGGGCTGGAGGTGTAATACTTCCACCAGCAACTTATTTTGACAAGATCCAAGCTGTCGTCAAGAAGTATGATATCCTTTTTATTGCGGATGAGGTCATCTGCGCCTTTGGGAGGCTTGGGGCCATGTTTGGTTGTGACAAATATAACATTAAGCCAGACCTTGTTTCCTTGGCAAAGGCACTTTCTTCTGCATACATGCCAATTGGAGCTGTCCTTGTGAGCCCAGAAATTTCAGAAGTAATACATTCGCAAAGCAGCAAACTTGGTTCCTTTTCTCATGGGTTCACTTATTCTGGATCACCTGTACCCTGTGCTGTTGCACTTGAAACACTCAAAATCTACAAGGAAAGAAATATTGTTGACGTCGTGAACAAGATAGCTCCAAAGTTCCAAGATGGCATAAAGGCTTTTTCTGATAGTCCCATCATTGGAGAGATACGGGGAACTGGCTTGATCCTTGGGACTGAGTTCACAGACAACAAATCACCTAATGATCCATTTCCTCCTGAATGGGGAATAGGTGCTTATTTCGGAAAACAATGTGAGAAACATGGGATGCTAGTTCGGGTAGCTGGAGATGGTATCATGATGTCTCCACCATTTATTATGTCACCTGAAGAAGTTGATGAGTTAATCAGCATTTATGGCAAAGCTTTAAGAGATACGGAAAAGAGAGTCCAAGAGCTCAAGTCTCAGCACAAGTAG 1542 0.43 MNSLIRSTLRNKTASALVCAAVPRSFRGSIIQAPLWSRSSSSESSLATDNSTSDVKTDQGFKGHDMLAPFTPGWHTTDVNPLVIEKSEGSYVYDINGKKYLDALAGLWCTALGGSEQRLVDAATAQLKKLPFYHSFWNRTTKPSLDLAKELLEFFTARKMAKAFFVNSGSEANDTQVKIVWYYFNALGKPNKKKFIARTKSYHGSTLIAASLSGLTALHQKFDLPAPFVLHTDCPHYWRYHLPGETEEEFSTRLAKNLEELILKEGPETIAAFIAEPVMGAGGVILPPATYFDKIQAVVKKYDILFIADEVICAFGRLGAMFGCDKYNIKPDLVSLAKALSSAYMPIGAVLVSPEISEVIHSQSSKLGSFSHGFTYSGSPVPCAVALETLKIYKERNIVDVVNKIAPKFQDGIKAFSDSPIIGEIRGTGLILGTEFTDNKSPNDPFPPEWGIGAYFGKQCEKHGMLVRVAGDGIMMSPPFIMSPEEVDELISIYGKALRDTEKRVQELKSQHK* 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g2597 513 SUPERFAMILY PLP-dependent transferases 67 499 IPR015424 -
Tpr3g2597 513 PANTHER GAMMA AMINOBUTYRATE TRANSAMINASE 1, MITOCHONDRIAL 25 508 - -
Tpr3g2597 513 Pfam Aminotransferase class-III 80 497 IPR005814 GO:0008483|GO:0030170
Tpr3g2597 513 Gene3D - 116 398 IPR015421 GO:0003824
Tpr3g2597 513 ProSitePatterns Aminotransferases class-III pyridoxal-phosphate attachment site. 306 343 IPR005814 GO:0008483|GO:0030170
Tpr3g2597 513 PANTHER ADENOSYLMETHIONINE-8-AMINO-7-OXONONANOATE AMINOTRANSFERASE 25 508 - -
Tpr3g2597 513 CDD OAT_like 66 498 IPR005814 GO:0008483|GO:0030170
Tpr3g2597 513 Coils Coil 491 511 - -
Tpr3g2597 513 Gene3D Aspartate Aminotransferase, domain 1 82 498 IPR015422 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g2597 Tpr-Chr3 25156164 25164281 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g2597 K16871 - gmx:100792355 895.19