Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g2578 ATGGGAGACGAAGGTATAGTGAGAGGTGTCACAAAGCAGGCAACCCCTGGGAAGGCTACTATATTAGCTCTTGGCAAAGCTTTCCCTCACCAGCTTGTGATGCAAGAGTATTTAGTTGATGGATATTTTAGGGACACTAATTGTGACAATCCTGAGCTTAAACAAAAGCTTGCTAGACTTTGCAAGACAACCACAGTAAAAACAAGGTATGTTGTTATGAATGGGGATATACTAAAGAAGTATCCAGAACTTGCTGTCGAAGGCGCCTCGACTGTAACACAACGTTTAGAGATATGTAACAACGCAGTTACACAAATGGCAATCGAAGCTTCCCAAGTTTGCCTAAAGAATTGGGGTAGACCCTTATCAGACATAACTCATGTAGTTTATGTTTCATCTAGTGAAGCTAGATTACCCGGCGGTGACCTATATTTGTCAAAAGGACTAGGACTAAACCCTAAAATTCAAAGAACTATGCTCTATTTCGCTGGATGCTCGGGAGGCGTAGCTGGCCTTCGCGTTGCAAAAGACATAGCTGAGAACAACCCTGGATGTAGAGTTTTGCTTGCTACTTCTGAAACTACAATTATTGGATTCAAGCCACCAAGTGTTGATAGGCCTTACGATCTTGTTGGTGTGGCACTCTTTGGAGATGGAGCCGGTGCTATGATAATTGGCTCAGACCCAGTGTTTGAAACTGAGACACCGTTGTTTGAGCTTCATACTTCAGCCCAAGAGTTTATACCAGACACAGAGAAGAAAATTGATGGGAAGCTGACTGAGGAGGGCATAAGTTTCACGCTAGCAAGGGAACTTCCTCAGATAATCGAAGACAATGTTGAGGGATTCTGTGATAAACTAATTGATGTTGTTGGGTTGGAGAATAAGGAGTACAACAAGTTGTTTTGGGCTGTGCATCCAGGTGGGCCTGCAATATTGAACCGCGTGGAGAAGCGGCTTGAGTTGTCGCCGGAGAAGCTGAATGCTAGTAGAAAAGCTCTAATGGATTATGGAAATGCTAGCAGCAATACTATTGTTTATGTGCTGGAGTATATGTTAGAAGAGGACAAGAAGATTAGAAAGGCGGGTGGAGGAGATTCTGAATGGGGATTGATACTTGCTTTTGGACCTGGAATTACTTTTGAGGGGATTCTAGCAAGGAACCTATGTGCATGA 1176 0.4337 MGDEGIVRGVTKQATPGKATILALGKAFPHQLVMQEYLVDGYFRDTNCDNPELKQKLARLCKTTTVKTRYVVMNGDILKKYPELAVEGASTVTQRLEICNNAVTQMAIEASQVCLKNWGRPLSDITHVVYVSSSEARLPGGDLYLSKGLGLNPKIQRTMLYFAGCSGGVAGLRVAKDIAENNPGCRVLLATSETTIIGFKPPSVDRPYDLVGVALFGDGAGAMIIGSDPVFETETPLFELHTSAQEFIPDTEKKIDGKLTEEGISFTLARELPQIIEDNVEGFCDKLIDVVGLENKEYNKLFWAVHPGGPAILNRVEKRLELSPEKLNASRKALMDYGNASSNTIVYVLEYMLEEDKKIRKAGGGDSEWGLILAFGPGITFEGILARNLCA* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g2578 391 Pfam Chalcone and stilbene synthases, C-terminal domain 239 389 IPR012328 -
Tpr3g2578 391 PIRSF PKS_III 7 390 IPR011141 GO:0009058|GO:0016747
Tpr3g2578 391 Pfam Chalcone and stilbene synthases, N-terminal domain 11 229 IPR001099 -
Tpr3g2578 391 PANTHER HYDROXYMETHYLGLUTARYL-COA SYNTHASE 13 389 IPR011141 GO:0009058|GO:0016747
Tpr3g2578 391 SUPERFAMILY Thiolase-like 216 387 IPR016039 GO:0016746
Tpr3g2578 391 CDD CHS_like 19 385 - -
Tpr3g2578 391 PANTHER TYPE III POLYKETIDE SYNTHASE B 13 389 - -
Tpr3g2578 391 SUPERFAMILY Thiolase-like 13 231 IPR016039 GO:0016746
Tpr3g2578 391 Gene3D - 4 236 IPR016039 GO:0016746
Tpr3g2578 391 Gene3D - 237 388 IPR016039 GO:0016746
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g2578 Tpr-Chr3 24930133 24932126 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g2578 164 389 Miscellaneous Gene Families AT3G52160 24.454 9.64e-10 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g2578 - - vun:114168705 662.529
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g2578 3 24930133 24932126 Tpr3g2578 3 24930133 24932126 ECH