Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g2544 ATGAGAAACCTCTTTGGAACCACAAGATCATTGGCGACCAAATTATTATTCAACACAAAAAAACCTCAATTCACACCATCATCATCATCATCATGCACAATTCGACCATACCAAACTATTCCAATGGTGATTGAAACCTCTTCTAGAGGTGAAAGAGCCTATGATATCTTCTCTCGTCTTCTCAAAGAACGAATCATTTGCATCAATGGACCTATCTCTGATGATACTGCTCATGTTGTTGTTGCTCAGCTTCTCTTTCTTGAATCTGAAAACCCTTCCAAGCCGATTAATATGTATCTCAATTCCCCTGGTGGCGCTGTTACTGCAGGGCTTGCAATTTATGATACTATGCAGTACATTCGGTCTCCAATAAACACAATCTGTTTGGGTCAGGCTGCGTCTATGGCTTCTCTTCTGTTGAGTGCGGGTGCCAAAGGTCAGAGGCGTTCTCTTCCAAATGCAACAGTCATGATTCACCAGCCCTCTGGTGGATACAGTGGCCAGGCAAAGGATATTGCAATTCATACTAAGCAGATTGTTCGAGTCTGGGATGCATTGAATGAGTTGTATGTCAAGCACACTGGCCAGCCACTTGATGTTATTCAGAAGAATATGGACAGGGATTATTTTATGACTGCTGAAGAGGCAAAGGAGTTTGGGATTATTGACGAGGTTATTGATCAGAGACCTATGACTTTGGTTTCTGACGCTGTTGCTGATGAAGGCAAAGATAAAGGTTCAAATTAG 747 0.4217 MRNLFGTTRSLATKLLFNTKKPQFTPSSSSSCTIRPYQTIPMVIETSSRGERAYDIFSRLLKERIICINGPISDDTAHVVVAQLLFLESENPSKPINMYLNSPGGAVTAGLAIYDTMQYIRSPINTICLGQAASMASLLLSAGAKGQRRSLPNATVMIHQPSGGYSGQAKDIAIHTKQIVRVWDALNELYVKHTGQPLDVIQKNMDRDYFMTAEEAKEFGIIDEVIDQRPMTLVSDAVADEGKDKGSN* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g2544 248 PRINTS Clp protease catalytic subunit P signature 55 70 IPR001907 GO:0004176|GO:0004252|GO:0006508
Tpr3g2544 248 PRINTS Clp protease catalytic subunit P signature 95 115 IPR001907 GO:0004176|GO:0004252|GO:0006508
Tpr3g2544 248 PRINTS Clp protease catalytic subunit P signature 126 143 IPR001907 GO:0004176|GO:0004252|GO:0006508
Tpr3g2544 248 PRINTS Clp protease catalytic subunit P signature 147 166 IPR001907 GO:0004176|GO:0004252|GO:0006508
Tpr3g2544 248 PRINTS Clp protease catalytic subunit P signature 204 223 IPR001907 GO:0004176|GO:0004252|GO:0006508
Tpr3g2544 248 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 25 247 IPR023562 -
Tpr3g2544 248 CDD S14_ClpP_2 55 225 IPR001907 GO:0004176|GO:0004252|GO:0006508
Tpr3g2544 248 ProSitePatterns Endopeptidase Clp serine active site. 126 137 IPR018215 -
Tpr3g2544 248 Hamap ATP-dependent Clp protease proteolytic subunit [clpP]. 39 229 IPR001907 GO:0004176|GO:0004252|GO:0006508
Tpr3g2544 248 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 25 247 - -
Tpr3g2544 248 ProSitePatterns Endopeptidase Clp histidine active site. 148 161 IPR033135 -
Tpr3g2544 248 SUPERFAMILY ClpP/crotonase 48 230 IPR029045 -
Tpr3g2544 248 Gene3D - 28 233 - -
Tpr3g2544 248 Pfam Clp protease 49 228 IPR023562 -
Tpr3g2544 248 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 32 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g2544 Tpr-Chr3 24634249 24639003 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g2544 K01358 - sspl:121782489 387.111