Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g2534 ATGAAGAACATAAACATATCTTTGTGCATGGTTATGACACTAGTACTTGTTCACTTAGGTGGAAGTGTACCTTCAAGTTTCAACTATGGTGATGCTCTTGACAAAAGTTTGATGTTCTTTGAAGCTCAAAGGTCTGGTAAATTACCACTTCAACAACAGCGGATTAAATGGCGCGGTGATTCCGGTCTCAAGGATGGAATTCAGCAAGGAGTGGACCTGGTGGGAGGATACTATGATGCAGGTGATCATGTGAAGTTTGGGCTACCAATGGCATTCAGTGTGACAATGCTTGCATGGGGAGCTATTGAGTTTAGTAAGGAAATGGCAGATTTAAACCAAATGGGACATACACTATGGGCCATTAAATGGGGAACTGATTACTTCATCAAAGCACATCCTCAGCCTAATGTTCTTTGGGGACAGGTGGGCGATGGAGCTTCTGATCATTACTGCTGGGAACGTGCCGAAGACATGAAGACTTCAAGAACTGCCTATAAACTTGATGAACAACACCCTGGCTCTGATCTTGCAGGTGAAACTGCAGCTGCATTGGCTTCTGCAGCCATAGCTTTCAGGCCTTACAACTCTTCTTACTCTAATCTCCTCCTAGTTCATGCAAAACAGCTCTTCACATTCGCGGATAGGTACAGAGGTCTATATGATGAATCTATATCTAGTGCTCACCAATTCTATGCTTCTTCTGGTTATTCAGACGAATTGTTATGGGCTGCTGCCTGGCTGCATCGAGCAACCGGTGATGAATACTACCTAAAGTATGTTGTGGACAATGCGGTTTATATGGGTGGAACCGGCTGGGCGGTGAAAGAGTTCTCTTGGGACAACAAATACGCTGGTGTCCAGACGCTCCTATCAAAGGTATTACTAGAAGGTAAAGCTGGTCCATATGCATCTACACTAAAGCAATATCAGGCCAAAGCAGATTATTTTTCCTGCGCCTGTTTGCAAAAGAATGATGGTTACAATGTTCAGAAAACTCAAGGTGGCTTAATATACGTGCACGAATGGAACAACATGCAGTATGCTTCATCTGCTGCATTTCTTTTAGCCGTTTACTCTAATTATCTGTCAGCTGCAAAAGCACAGCTCAACTGTCCTGAGGGTCAAAGTCAGCCTCAGGAACTCCTCGATTTTGTCAAGTCACAGGCTGATTATATCCTTGGTAAAAACCCAGAGGATATGAGTTACTTGGTAGGATATGGACCAAAATATCCGATTCATGTTCACCACAGAGGCGCTTCCATTGCTTCAATCTTTTCTCTTCACTCTGAGGTTGGTTGCGCACAAGGATTTGACGCATGGTATAACCGTATTGAGCCAAATCCTAATGTAATCTATGGAGGTCTTGTGGGGGGTCCAGATAGAAATGATCACTACTCCGATGACAGATCCAATTATGAACAAACTGAGCCTACACTATCAGGTTCTGCTCCTCTTGTAGGCATCTTCGCTAAACTGCAAAGTTCATATAGGAATCCAGGTTACTACCATAAGGAATCACCACTGCCACAACAACAAACATCAAGTACAACAAGTTCTTACAAAGAACCAACACCTAAAACCCTTTGGAAAGAACCAACACCTAAAACACCACAAGGTGCACCAGTTGAATTCCTTCACTCAATTTCCAGCTCATGGACAGTTGGTACTACAACTTATTACCGACACAAGGTGGTAATCAAGAACACTTCTGCAAAGCCAATCTCAGATCTTAAGTTGTTGATTGAGAATCTCTCAGGTTCTGTATGGGGTCTGTATCCAACTGGAGAGAAGAACACCTATGAACTTCCACAGTGGTTCAAGGTCTTGAATCCTGGTTCTGAATGTATTTTTGTTTATGTTCAAGGTGGACCTCAAGCAAAAATCTTGATTCAAAGCTTCCACTAA 1905 0.4294 MKNINISLCMVMTLVLVHLGGSVPSSFNYGDALDKSLMFFEAQRSGKLPLQQQRIKWRGDSGLKDGIQQGVDLVGGYYDAGDHVKFGLPMAFSVTMLAWGAIEFSKEMADLNQMGHTLWAIKWGTDYFIKAHPQPNVLWGQVGDGASDHYCWERAEDMKTSRTAYKLDEQHPGSDLAGETAAALASAAIAFRPYNSSYSNLLLVHAKQLFTFADRYRGLYDESISSAHQFYASSGYSDELLWAAAWLHRATGDEYYLKYVVDNAVYMGGTGWAVKEFSWDNKYAGVQTLLSKVLLEGKAGPYASTLKQYQAKADYFSCACLQKNDGYNVQKTQGGLIYVHEWNNMQYASSAAFLLAVYSNYLSAAKAQLNCPEGQSQPQELLDFVKSQADYILGKNPEDMSYLVGYGPKYPIHVHHRGASIASIFSLHSEVGCAQGFDAWYNRIEPNPNVIYGGLVGGPDRNDHYSDDRSNYEQTEPTLSGSAPLVGIFAKLQSSYRNPGYYHKESPLPQQQTSSTTSSYKEPTPKTLWKEPTPKTPQGAPVEFLHSISSSWTVGTTTYYRHKVVIKNTSAKPISDLKLLIENLSGSVWGLYPTGEKNTYELPQWFKVLNPGSECIFVYVQGGPQAKILIQSFH* 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g2534 634 MobiDBLite consensus disorder prediction 505 524 - -
Tpr3g2534 634 Gene3D - 25 495 IPR012341 GO:0005975
Tpr3g2534 634 SMART CBM49_2 542 622 IPR019028 GO:0030246
Tpr3g2534 634 PANTHER ENDOGLUCANASE 5 9 589 - -
Tpr3g2534 634 PANTHER ENDO-1,4-BETA-GLUCANASE 9 589 - -
Tpr3g2534 634 SUPERFAMILY Six-hairpin glycosidases 26 501 IPR008928 GO:0005975
Tpr3g2534 634 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 391 417 IPR018221 -
Tpr3g2534 634 MobiDBLite consensus disorder prediction 505 536 - -
Tpr3g2534 634 Pfam Glycosyl hydrolase family 9 29 488 IPR001701 GO:0004553|GO:0005975
Tpr3g2534 634 Pfam Carbohydrate binding domain CBM49 543 621 IPR019028 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g2534 Tpr-Chr3 24539068 24543599 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g2534 27 634 Glycoside Hydrolase AT1G48930 71.053 0.0 844
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g2534 K01179 - gmx:100802420 1058.51