Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g2526 ATGAAAAGAGGTTTCAGCTTATTCATTCCTCTCTGCAACTCAAACTCTCCATTAGCGCCGCCACGCTCACTCTCCTGCGGCGTTTCCTTCTTCTCATCTAGATCTCATCTCTCCACCTCCTCCGCCGCCATGTCAGCACCTGACACACAACAAGATATTCACTGGCCTGCCAAGCGCGTCAGAGATACCTTCGTCAAGTTCTTCGAAGATAAGAATCATGTCTATTGGAAGTCTAGCCCCGTCGTCCCCTTCAACGACCCTACTCTCCTCTTTGCTAACGCCGGGATGAACCAGTACAAGCCAATTTTTTTGGGGACTGCTGATCCTAACACTGCCTTGAGCAAACTCTCTCGTGCTTGCAATACCCAGAAGTGCATTCGAGCAGGTGGCAAGCACAATGATCTTGACGACGTGGGGAAAGACACTTACCATCACACGTTCTTTGAGATGTTGGGAAATTGGTCGTTTGGGGATTACTTTAAAGAAGAAGCCATTACCTGGGCATGGGAACTTCTAACTAAAGTTTATAAATTACCATCAGATCGCATTTATGCTACATATTTTGGTGGTGATGAGAAAGTTGGTCTTTCCCCTGATATTGAGGCTAGAGATATATGGTTAAAGTTTTTGCCTCCTGGACGCGTGCTTCCTTTTGGCTGTAAAGACAATTTCTGGGAGATGGGTGACACTGGTCCTTGCGGACCTTGCACCGAAATTCATTTTGACAGAGTTGGTAACCGAGATGCTGCATCTTTAGTCAATAATGACGATCCTACCTGTATTGAGATTTGGAATCTCGTCTTTATTCAGTTCAATAGGGAGGCTGACGCCTCTCTTAAATCCCTGCCTGCAAAGCATGTTGACACTGGAATGGGTTTTGAACGATTGACCTCTATTCTACAAAACAAGATGAGCAATTATGACACCGATGTCTTCATGCCCATCTTTGATGCTATTCAGCTGGCAACTGGTGCTCGGCCATATACTGGAAAAGTCGGACCAGAGGATGCAGATAAAGTTGACATGGCATACAGGGTTGTTGCAGATCACATAAGGACTCTGTCATTTGCAATTGCTGATGGATCTCGACCTGGTAACGAAGGTCGTGAATATGTTCTGAGGCGTATACTCCGTCGAGCTGTTCGATATGGACGTGAAGTGCTAAAAGCTGAAGAGGGTTTTTTCAATGGGCTTGTAAATGTTGTGGCAAATCTACTGGGTGATGTTTTCCCTGAGCTAAAACAACAGGAAGTGCACATTAGGAATGTGATTAAAGAGGAGGAGGAAAGTTTTGGCAGAACCTTAGTTAAGGGCATTGCAAAATTTAATACAGCTGTTCAACATGTTCAGGGAAACATACTGAGCGGGGAGGTAGCGTTTGAGTTGTGGGATACATTTGGGTTCCCATTAGATCTCACACAGGTAGGCTTATTGCTTCACAATAGTGAGCTGTATGAAATTGTTCTTCTATTATGCTTTTTTGTTTTTGTATTTCCTAACATTTCTATTTATCAGCTTATGGCTGAAGAGAATAAATTACAAGTTGATGTCGAAGGTTTTAATAGTGCTATGGAAGCTGCAAGACAAAGATCAAGAACTGCTCAAAATAAGCAAGCTGGCGGTGCTATTGTCATGGATGCTGATGCTACATCAGCGTTGCAAAAAAGAAGCATTGCTCCAACAGATGATAGTTTCAAATTTGTTTGGTTCAAGGACCATGAGAGTGTGGTAAAAGCCATATATACTGGTTCTCAGTTTGTCGATTCTGTTAATGCTGATGGTGATGTTGGGGTAATTCTGGAATCTACAAGCTTCTATGCTGAGCAAGGTGGTCAGATTTTCGATACTGGGTCACTTGATTTCCAACATGCGTCATTTCAAATTCATAATGTTCAAGTTTTCGGAGGTTTCGTGCTTCACATTGGTAATGGGACAGGTATCTCTGTTGGCGACAAAGTAGTATGCAAGGTTGATTATGGAAGACGCTCCCTTATAGCCCCTAACCATACATGCACACATATGTTAAATTTTGCTCTTAGGGAAGAACTTGGCGATCATGTAGACCAGAAAGGATCTATTGTTCTTCCTGAAAAATTGAGATTTGATTTTTCTCACGGCAAGCCTATTGGTGCTGATTCTTTGAGGAAAATTGAGTCTACCGTTAATCAGCAAATTGGAGCTGAATTGGATGTAAATGCGAAGGAGGTAACTCTCGCCGATGCAAAGGGTATTATTGGTCTTCGAGCTGTTTTTGGAGAAGTATATCCTGATCCAGTTAGAGTTGTGTCAGTTGGACCTAAAGTTGAAGATCTCCTTGCTGATCCTAAGAACGAAAAATGGTTATCTGTTTCATCTGAGTTGTGTGGCGGTACCCATATTTCAAACACACGAGAGGCTAAAGCTTTTGTAATTTTAACCGAGGAGGGAATTGCTAAAGGAATCCGCAGAATAACCGCTGTCACAACTGATCGTGCTTCTGATGCAATGAAATTGGCAGATGAATTTGAGCAGCAAGTAGATGAAGCAGCTAAGCTGGAAGGAAGTTTGCTGGAAGAGAAAGTTTCATCTCTGAAAGGCAATGTGGAAACGTTATCAATTCCTGCAGCTAAGAAAGCTGAAATCAAGACCAAGATAGCCCTACTTCAGGATCAAGTGAGAAAAGCGCAAAAGCGTGTTGCTGAAGAAAACAAACGTAAAGCTGTAGCGATAACAGCTGAGAAGGCTGATCTAGCTGTTTCAGATGGGAAATCTTTTTGCATATCTCACGTTGATGTTGGACTGGATGTTGCAGCAGTTCGTGAGGCTGTTACAAAAGTCATTGATCAGAAGGGGTTGTCAGTGATGGTTTTTAGCACGGATGAATCTACAAACAAGGCTGTAGTTTGTGCTGGGGTGCCGGAGAAAGGAGATAAAGGTAAGCTGGATGTATCAGAGTGGCTGAGTAATGCTTTGGGGCCACTGAAAGGTAGATGTGGTAAAGGAAAAGGAGGTCTTGCAACGGGACAGGGTACAGATGCATCACACGTAAATGAGGCTATGGATCTTGCAGTGAAATTTGCATCGGTGAAATTGACTTGA 3078 0.4308 MKRGFSLFIPLCNSNSPLAPPRSLSCGVSFFSSRSHLSTSSAAMSAPDTQQDIHWPAKRVRDTFVKFFEDKNHVYWKSSPVVPFNDPTLLFANAGMNQYKPIFLGTADPNTALSKLSRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKEEAITWAWELLTKVYKLPSDRIYATYFGGDEKVGLSPDIEARDIWLKFLPPGRVLPFGCKDNFWEMGDTGPCGPCTEIHFDRVGNRDAASLVNNDDPTCIEIWNLVFIQFNREADASLKSLPAKHVDTGMGFERLTSILQNKMSNYDTDVFMPIFDAIQLATGARPYTGKVGPEDADKVDMAYRVVADHIRTLSFAIADGSRPGNEGREYVLRRILRRAVRYGREVLKAEEGFFNGLVNVVANLLGDVFPELKQQEVHIRNVIKEEEESFGRTLVKGIAKFNTAVQHVQGNILSGEVAFELWDTFGFPLDLTQVGLLLHNSELYEIVLLLCFFVFVFPNISIYQLMAEENKLQVDVEGFNSAMEAARQRSRTAQNKQAGGAIVMDADATSALQKRSIAPTDDSFKFVWFKDHESVVKAIYTGSQFVDSVNADGDVGVILESTSFYAEQGGQIFDTGSLDFQHASFQIHNVQVFGGFVLHIGNGTGISVGDKVVCKVDYGRRSLIAPNHTCTHMLNFALREELGDHVDQKGSIVLPEKLRFDFSHGKPIGADSLRKIESTVNQQIGAELDVNAKEVTLADAKGIIGLRAVFGEVYPDPVRVVSVGPKVEDLLADPKNEKWLSVSSELCGGTHISNTREAKAFVILTEEGIAKGIRRITAVTTDRASDAMKLADEFEQQVDEAAKLEGSLLEEKVSSLKGNVETLSIPAAKKAEIKTKIALLQDQVRKAQKRVAEENKRKAVAITAEKADLAVSDGKSFCISHVDVGLDVAAVREAVTKVIDQKGLSVMVFSTDESTNKAVVCAGVPEKGDKGKLDVSEWLSNALGPLKGRCGKGKGGLATGQGTDASHVNEAMDLAVKFASVKLT* 1026
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g2526 1025 Coils Coil 825 845 - -
Tpr3g2526 1025 PANTHER BNACNNG61840D PROTEIN 495 1024 - -
Tpr3g2526 1025 PANTHER BNACNNG61840D PROTEIN 19 475 - -
Tpr3g2526 1025 TIGRFAM alaS: alanine--tRNA ligase 60 474 IPR002318 GO:0000166|GO:0005737
Tpr3g2526 1025 SMART tRNA_SAD_4 759 818 IPR012947 GO:0004812|GO:0005524|GO:0043039
Tpr3g2526 1025 Gene3D - 658 834 - -
Tpr3g2526 1025 PRINTS Alanyl-tRNA synthetase signature 133 144 IPR002318 GO:0000166|GO:0005737
Tpr3g2526 1025 PRINTS Alanyl-tRNA synthetase signature 261 272 IPR002318 GO:0000166|GO:0005737
Tpr3g2526 1025 PRINTS Alanyl-tRNA synthetase signature 288 301 IPR002318 GO:0000166|GO:0005737
Tpr3g2526 1025 PRINTS Alanyl-tRNA synthetase signature 345 361 IPR002318 GO:0000166|GO:0005737
Tpr3g2526 1025 PRINTS Alanyl-tRNA synthetase signature 369 382 IPR002318 GO:0000166|GO:0005737
Tpr3g2526 1025 SUPERFAMILY Translation proteins 585 657 IPR009000 -
Tpr3g2526 1025 SUPERFAMILY ThrRS/AlaRS common domain 657 836 IPR018163 GO:0000166
Tpr3g2526 1025 Gene3D - 567 657 - -
Tpr3g2526 1025 Hamap Alanine--tRNA ligase [alaS]. 55 1024 IPR023033 GO:0004813
Tpr3g2526 1025 Gene3D Bira Bifunctional Protein; Domain 2 56 304 IPR045864 -
Tpr3g2526 1025 PANTHER ALANYL-TRNA SYNTHETASE 495 1024 - -
Tpr3g2526 1025 PANTHER ALANYL-TRNA SYNTHETASE 19 475 - -
Tpr3g2526 1025 Pfam Threonyl and Alanyl tRNA synthetase second additional domain 759 817 IPR012947 GO:0004812|GO:0005524|GO:0043039
Tpr3g2526 1025 Coils Coil 871 898 - -
Tpr3g2526 1025 SUPERFAMILY Class II aaRS and biotin synthetases 57 307 IPR045864 -
Tpr3g2526 1025 ProSiteProfiles Alanyl-transfer RNA synthetases family profile. 55 831 IPR018165 GO:0003676|GO:0004813|GO:0005524|GO:0006419
Tpr3g2526 1025 SUPERFAMILY Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 308 475 IPR018162 GO:0000166|GO:0004813|GO:0005524|GO:0005737|GO:0006419
Tpr3g2526 1025 CDD AlaRS_core 57 303 - -
Tpr3g2526 1025 Pfam DHHA1 domain 883 1019 IPR003156 GO:0003676
Tpr3g2526 1025 Pfam tRNA synthetases class II (A) 501 659 IPR018164 GO:0000166|GO:0004813|GO:0005524|GO:0006419
Tpr3g2526 1025 Pfam tRNA synthetases class II (A) 60 474 IPR018164 GO:0000166|GO:0004813|GO:0005524|GO:0006419
Tpr3g2526 1025 Gene3D - 913 1020 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g2526 Tpr-Chr3 24379240 24390368 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g2526 K01872 - gmx:100788271 1646.33