Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g2501 ATGACAAAGCCTTGTGATTTGCAAATCAAAATTAATGATCAGCAGATATTCCTTTTGAAAGAGAAGATTATATCAAAATACTGTGGAGAGGTGAAGAAAATCTTGAATCATCAAAAGAAAAGATGTCAAGTGAAGAAGATGGGAATTATGATCAACGATTTCCCGGGAGGTTCAGATGGGTTTGAGCTAATTTCAAGGTTTTGTTACAACAATGGTGAAATACCAATTACTGTGGCAAATGTGTCTCTTCTCTATTGTTGTGCCATTTATCTTGGAATGACTGAGGAAGTTTTCAACAACAATCTCTTGCAACAAACACAAACTTTTATTGAGGGGATGCATAATTGGAAATGGAATGACATACTTGAAAGTCTAATGAGTTGCAAATTGTTCTATACATATGCAGATTGCTATGGTCTATTGGAGAAGATCATTAGTGCACTGTTAATAAAGATTGTCCAAAATTCAGATGCAAACCTCATAACTTACACTGCCTCTTTCTCATCGTCATCACCATCATCATCAACACCATCTTCACCTGAAAGCAATTCTGTCAAGAGATTCTCTTCTTCAACACAAACTACACCAGAAATAACCAAGTCAACTCTGCCAAGCAAAGCATGGTGGTTTGAAGATTTGGCAATTTTACCACCAAATATAATTGAGAAACTTTTTCAGTGTATTGAAGCATACAAAGCTGAAAACAACAACTTAATCTTTACAAGATTTCTGTTGCAATATCTGAAAACAGCTACTCAAACCAAAGCTGTTGATTGCAGAAACAGCAATGAGTATGCTGCTCTTGCAGAAACAGCTGCTTATGGAGTCATACTTGTTGCTAAGAAAACCTTTTCTTGCAGAGGGCTATTTTGGGTATTAAGGCTTGTTTCTAGATTTGGGTTGAGTAAAGGTTGCAGAACTGAACTGGAGAAATTGATTGGAGGGATGCTTGAACAAGCTACACTGGATGATCTTTTGGTCTCTGGAAATGATATGGGGACTTATTATGATGTTAATTTGGTGATAAGACTGGTTAAACAATTTGTTGATACCAATAGCTATGATGGAGTGTCTTTACAGAGAATGAAAAGGGTTGGTAGATTAATTGACAAGTATTTGAGAGAGATATCACCTGATCAGAAACTCAAGATCTCTAAATTTCTTGGAGTTGCAGAATGTTTACCTGACTCTGCAAGGGATTGCTTTGATGGGGTGTACAAAGCTATTGATATCTATCTTGAGTCTCACCCAAATGTTCCATTTGAGGAAAGATCAAGATTGTGTAAATGTCTTAACTATGGTAAACTCAGTTTTGGAGCTAGTAAAGATCTGGCCAAGAACCCCAGAATACCTCCAGGGGTTGCAATGCAGGCACTTATTTCCCAACAAAGAAAAATTCCAACAAGCAACTTTGTAACTGAGAGTCCAAGAAAAAGCCGTTCCCAAATAGTTGTGTACAATGAAGCCAACAAAGACAGCTTCTGCCAAGAGAGAAAGTACATAAAACTAAACCTGGAGGGATTGCAATATAAGGCAGTAGAACTGGAGAAATTAGAAGAAGTGAATGGTCAGATTTCAAATATGTTTAGCCGTAATGTCTTGCTCACTCCTCGTTCTAGAAACTTGCCAAGATATTGTTGA 1641 0.3705 MTKPCDLQIKINDQQIFLLKEKIISKYCGEVKKILNHQKKRCQVKKMGIMINDFPGGSDGFELISRFCYNNGEIPITVANVSLLYCCAIYLGMTEEVFNNNLLQQTQTFIEGMHNWKWNDILESLMSCKLFYTYADCYGLLEKIISALLIKIVQNSDANLITYTASFSSSSPSSSTPSSPESNSVKRFSSSTQTTPEITKSTLPSKAWWFEDLAILPPNIIEKLFQCIEAYKAENNNLIFTRFLLQYLKTATQTKAVDCRNSNEYAALAETAAYGVILVAKKTFSCRGLFWVLRLVSRFGLSKGCRTELEKLIGGMLEQATLDDLLVSGNDMGTYYDVNLVIRLVKQFVDTNSYDGVSLQRMKRVGRLIDKYLREISPDQKLKISKFLGVAECLPDSARDCFDGVYKAIDIYLESHPNVPFEERSRLCKCLNYGKLSFGASKDLAKNPRIPPGVAMQALISQQRKIPTSNFVTESPRKSRSQIVVYNEANKDSFCQERKYIKLNLEGLQYKAVELEKLEEVNGQISNMFSRNVLLTPRSRNLPRYC* 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g2501 546 PANTHER OS12G0117600 PROTEIN 2 522 IPR043454 -
Tpr3g2501 546 Pfam NPH3 family 208 440 IPR027356 -
Tpr3g2501 546 MobiDBLite consensus disorder prediction 166 198 - -
Tpr3g2501 546 PANTHER PHOTOTROPIC-RESPONSIVE NPH3 FAMILY PROTEIN 2 522 - -
Tpr3g2501 546 ProSiteProfiles NPH3 domain profile. 207 465 IPR027356 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g2501 Tpr-Chr3 24011971 24014661 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g2501 6 469 EF-hand Containing Proteins AT3G44820 27.022 8.87e-50 180
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g2501 - - gmx:100808259 796.964