Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g2489 ATGCCAATGCCAATGCCATCTTCATTCCAAACTCACAATTTCAAGCGCTTCAAACCCACCGATCTATGCATCGTCAAACCTATCCTCTCTTCCAAAACCCATCTCTCTCAAGCCGTTTCTTCTCTTGATCTTTTGCACCCCAAAGGTATTCGTTTACCTTCTCACGTTCTCGTTAATCTATTGCGTCGTTGCTCTGAAACAAAGTCTTATAAAGAGGGTAAGCTTGTTCATCTTCATTTGAAGCTTACCGGTTTTAAACGACCCACTACGCTTATTGCTAATCATTTGATTCATATGTATTTTTGTTGTGGCGATTATGTTTGTGCACGCAAGGTGTTTGATAAAATGGAGGGTAGAAATTTGTATTCTTGGAATAATATGATTTCTGGGTATGTTAAATTAGGGATGATGAAACAAGCTAGGAGCATGTTTTATCAAATGCCGCAAAAGGATTATGTGTCGTGGAATTCGATGGTGGTTGGTTATGCACATTGTGGGAGGTTTGGCGAGGCTTTGAGGTTTTATGGACAGTTGAGGAGATTGTGTATTGGATATAATGAGTTTACGTTTGCTAGTGTATTGATTGTTTGTGTGAAATTGAAAGAATTTGAACTTTGTAGGCAGATTCATGGACAGGTTTTAGTTGTTGGGTTTTTATCCAATGTGGTTGTTTCCAGCTCAATTGTAGATGCTTATGCAAAATGCGGTAGAATGGAAGATGCAAGGAGATTGTTTGATGATATGCCCGTGAGAGATATTCCTGCTTGGACGACGTTAGTTTCAGGATATGCTTTATGCGGGGATATGGAATCAGCTGCTGAACTGTTTAGTCAGATGCCCAAGAAAAATACCTATTCTTGGACGTCTTTGATCGGAGGTTATGCGAGAAATGGTCTGGGTCATAAAGCTCTTGGAGTGTTTAGAAAGATGATTAAGCATCAAGTTAAGCCTGATGAATTCACATTCAGTAGTTGCCTGTTTGCTTGTGCTACTATCGCTTCACTGAAGTATGGTAAGCAGATACATGCATTTTTGGTGCGGAATAACATTAGAACTAATCCTGTTGTTGTTAGTGCTATTGTTGACATGTATGCAAAATGTGGAAGCATGGAGACTGCCATGCAAGTCTTTGTAATCGTCAGAAATATGCAACATGTAGTGTTGTGGAACACTATGATATCAGCACTGGCTCACTATGGCTATGGGAAAGAAGCAGTTATGATGCTCAACGAGATTCTGAAATCAGGAGTGAAGCCAAACAAGACCACTTTTGTTGCCATTCTAAATGCTTGTAGTCATTCAGGCCTTGTCCACGAAGGACTCCAGTTTTTCAATTCCATGCATGCTGTGCACAGCATTGTCCCAGACCTAGAACACTACGCAAGCCTAATTGATCTTTTGGATCAAGCTGGATGTATTGATGAATCAATGAAGGATACTGTAAACCATGTTTGGTATTCTTTGCTAGGTGTATGTAGACTGAATGGAAGTACAGGACTTGAAAGAGAAGTAACTGAATTCCTTATTAAATGGCAGCCTCAATCTTCTGCTGCTTATGTATTACTTTCCGGTACATATGCAGCACTCGTGAAATGGGGATTGGTTGAGGAAGTAAGACATATTATGGATGAGAGACGTGTAAGGAAAAATCAGTCCATTAGTTGGATCGAAATTGAAAATGAGGTCCATTCTTTCACTTTATCAGATGGATTGCACCCTATGAAGGAAACAATATACTCAGCTTTGGGGCACTTAAATAACCAGATAGAGGACAATGCCCCATACCTAACTGAAGGATAG 1800 0.3994 MPMPMPSSFQTHNFKRFKPTDLCIVKPILSSKTHLSQAVSSLDLLHPKGIRLPSHVLVNLLRRCSETKSYKEGKLVHLHLKLTGFKRPTTLIANHLIHMYFCCGDYVCARKVFDKMEGRNLYSWNNMISGYVKLGMMKQARSMFYQMPQKDYVSWNSMVVGYAHCGRFGEALRFYGQLRRLCIGYNEFTFASVLIVCVKLKEFELCRQIHGQVLVVGFLSNVVVSSSIVDAYAKCGRMEDARRLFDDMPVRDIPAWTTLVSGYALCGDMESAAELFSQMPKKNTYSWTSLIGGYARNGLGHKALGVFRKMIKHQVKPDEFTFSSCLFACATIASLKYGKQIHAFLVRNNIRTNPVVVSAIVDMYAKCGSMETAMQVFVIVRNMQHVVLWNTMISALAHYGYGKEAVMMLNEILKSGVKPNKTTFVAILNACSHSGLVHEGLQFFNSMHAVHSIVPDLEHYASLIDLLDQAGCIDESMKDTVNHVWYSLLGVCRLNGSTGLEREVTEFLIKWQPQSSAAYVLLSGTYAALVKWGLVEEVRHIMDERRVRKNQSISWIEIENEVHSFTLSDGLHPMKETIYSALGHLNNQIEDNAPYLTEG* 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g2489 599 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 283 317 IPR002885 -
Tpr3g2489 599 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 385 419 IPR002885 -
Tpr3g2489 599 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 221 255 IPR002885 -
Tpr3g2489 599 Pfam PPR repeat 153 181 IPR002885 -
Tpr3g2489 599 Pfam PPR repeat 122 150 IPR002885 -
Tpr3g2489 599 Pfam PPR repeat 356 377 IPR002885 -
Tpr3g2489 599 Pfam PPR repeat 94 120 IPR002885 -
Tpr3g2489 599 Pfam PPR repeat 226 252 IPR002885 -
Tpr3g2489 599 Gene3D Tetratricopeptide repeat domain 430 555 IPR011990 GO:0005515
Tpr3g2489 599 Gene3D Tetratricopeptide repeat domain 196 279 IPR011990 GO:0005515
Tpr3g2489 599 Gene3D Tetratricopeptide repeat domain 28 183 IPR011990 GO:0005515
Tpr3g2489 599 Gene3D Tetratricopeptide repeat domain 288 429 IPR011990 GO:0005515
Tpr3g2489 599 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 120 154 IPR002885 -
Tpr3g2489 599 Pfam PPR repeat family 386 432 IPR002885 -
Tpr3g2489 599 Pfam PPR repeat family 282 330 IPR002885 -
Tpr3g2489 599 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 38 281 - -
Tpr3g2489 599 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 183 568 - -
Tpr3g2489 599 TIGRFAM PPR: pentatricopeptide repeat domain 423 456 IPR002885 -
Tpr3g2489 599 TIGRFAM PPR: pentatricopeptide repeat domain 255 282 IPR002885 -
Tpr3g2489 599 TIGRFAM PPR: pentatricopeptide repeat domain 285 319 IPR002885 -
Tpr3g2489 599 TIGRFAM PPR: pentatricopeptide repeat domain 387 420 IPR002885 -
Tpr3g2489 599 TIGRFAM PPR: pentatricopeptide repeat domain 153 181 IPR002885 -
Tpr3g2489 599 TIGRFAM PPR: pentatricopeptide repeat domain 122 151 IPR002885 -
Tpr3g2489 599 TIGRFAM PPR: pentatricopeptide repeat domain 227 253 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g2489 Tpr-Chr3 23859517 23862357 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g2489 118 590 Glycoside Hydrolase AT3G49170 31.463 1.23e-80 269
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g2489 - - lja:Lj3g3v3500060.1 879.396