Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g2488 ATGGGTGCTCAGGTCTCGAAACAAATCGAAAAGCGAAAGACAATCGAAAAAGAAGAGAAATCTCTTTCTGATCTAAAGAGGTTAGGAGAAAACTACCCTGGCTCTGATTATATCCCATTAGACAGAAAAATGTGGATGTCTAATCTGAATCCTGAGAAACTTAAGATCAACATGATTGTTTGGCCCGGAACACATGATTCTGCGACGAACAAAATCGGTATACCAGGAATCACTCGGCCTTTCGCGCAATGCCAAACCATTTCCATCTACAATCAGCTTGTGAGAGGAACAAGAGTGTTTGATATTCGTGTGCAAGAGGATCGAAGAGTATGTCACGGAATTATCCTAACTTACAGCGTAGACATTGTTATCAGAGATGTAAAAAAGTTCTTATCAGAAACTGAATCCGAAATCATAATCCTCGAGGTTAGAACCGAGTATGGACATAATGATCCACCGGAATTCGATAAGTACCTCGAAGAAAACTTAGGTGAGTACTTAATTCACCAAGATGATTCTGTTTTTGATAAGACTATTGCAGAAGTGTTACCAAAAAGAGTTATATGTGTTTGGAAGCCGAGAAATTCACCACAACCGAAGGCAAGAAGTAGTCTTTGGAGTGCAGGTTATTTAAGGGATAATTGGATTAACACAGATTTTCCATTAACAAAGTTTGAGAGTAATATGAAATATTTGAGCGAACAGGAACGTGTTGTGTCTAGAAAATACTTTTATAGAGTCGAGAATACTGTTACGCCTGTCCCTGACAACCCGATTGTGTGTGTGAAACCTGTGACCGAACGCATTCATGGATATTCAAGACTCTTCATTAGTCAGTGCTTTTCTAAAGGGTGTAGTGATAGATTGCAGATATTTTCTACTGATTTTATAGACTTGGATTTTGTTGATGCATGTGTTGGACTCACCTATGCAAGGGTTGAGGGTAAAGCATGA 954 0.3899 MGAQVSKQIEKRKTIEKEEKSLSDLKRLGENYPGSDYIPLDRKMWMSNLNPEKLKINMIVWPGTHDSATNKIGIPGITRPFAQCQTISIYNQLVRGTRVFDIRVQEDRRVCHGIILTYSVDIVIRDVKKFLSETESEIIILEVRTEYGHNDPPEFDKYLEENLGEYLIHQDDSVFDKTIAEVLPKRVICVWKPRNSPQPKARSSLWSAGYLRDNWINTDFPLTKFESNMKYLSEQERVVSRKYFYRVENTVTPVPDNPIVCVKPVTERIHGYSRLFISQCFSKGCSDRLQIFSTDFIDLDFVDACVGLTYARVEGKA* 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g2488 317 SUPERFAMILY PLC-like phosphodiesterases 42 308 IPR017946 GO:0006629|GO:0008081
Tpr3g2488 317 Pfam Phosphatidylinositol-specific phospholipase C, X domain 81 173 IPR000909 -
Tpr3g2488 317 PANTHER 1-PHOSPHATIDYLINOSITOL PHOSPHODIESTERASE-LIKE PROTEIN 7 314 - -
Tpr3g2488 317 SMART plcx_3 50 192 IPR000909 -
Tpr3g2488 317 Gene3D Phosphatidylinositol (PI) phosphodiesterase 41 309 IPR017946 GO:0006629|GO:0008081
Tpr3g2488 317 PANTHER UNCHARACTERIZED 7 314 - -
Tpr3g2488 317 CDD PI-PLCXDc_plant 32 312 - -
Tpr3g2488 317 ProSiteProfiles Phosphatidylinositol-specific phospholipase X-box domain profile. 56 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g2488 Tpr-Chr3 23857355 23858590 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g2488 1 317 Acyl Lipid Metabolism Gene Families AT4G38690 72.013 0.0 500
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g2488 - - lja:Lj3g3v3500050.1 542.732