Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g2478 ATGGCTCGCTTAATTCTCTTTCTCATTTTTCTCACCTTCATTACATTATCTTTCCTCTCAGAGGTTCAATCAGCATCGTTCAAGATTGTTAACAGATGCCGTTACACTATATGGCCAGGATTACTCTCCGGCGCCACCTCGCCGCCGCTACCAACCACCGGATTCACCCTCAAGAGTGGAAAATCAAGGACTATACAAATCCCGAGATCTTGGTCAGGTCGGTTATGGGCAAGGTCTCTCTGCGGCCGAGACTCCGACGGAAAATTCTCCTGCGTAACCGCCGACTGTGGTTCTGGAAAAGTTTCCTGTGCCGGAGGTGGTGCCAAACCTCCGGCAACATTGGCGGAGTTCACCTTGAACGGAGCAGACGGGTTGGATTTCTACGACGTGAGTATGGTCGACGGTTATAATCTTCCGATGCTGATCGTGGCTCAAGGAGGGACTAGAGGTGGCTGCAGTGCAACCGGTTGTCTTGTGGATCTTAACGGCGGTTGTCCGGCAGATCTTAAGGTGGCGCGTGGTAATGGGAGTGGTGGAAGTGTTGCTTGTAGAAGCGCGTGTGAAGCTTTTGGGGATCCTCGTTATTGTTGTAGTGAGGCGTACTCAACGCCTGACACGTGTGGTCCGTCTGTTTACTCGTTGTTTTTTAAGCATGCTTGCCCACGCGCATATAGCTACGCGTATGATGATAAGACCAGTACCTACACATGTGCTTCTGCTAACTATTTGATAGTGTTTTGTCCTTTACCTTATACAAGCCAAAAACTGTTGGGAGCAAGGAAAGATGGGGCACCGCTTCCTCTTGTAAACACAACTATGATGTACTTCTCAAAAAAGCATTCAGGCGGTTCATCGTCAACAGGACTTGAAAGATAG 876 0.4909 MARLILFLIFLTFITLSFLSEVQSASFKIVNRCRYTIWPGLLSGATSPPLPTTGFTLKSGKSRTIQIPRSWSGRLWARSLCGRDSDGKFSCVTADCGSGKVSCAGGGAKPPATLAEFTLNGADGLDFYDVSMVDGYNLPMLIVAQGGTRGGCSATGCLVDLNGGCPADLKVARGNGSGGSVACRSACEAFGDPRYCCSEAYSTPDTCGPSVYSLFFKHACPRAYSYAYDDKTSTYTCASANYLIVFCPLPYTSQKLLGARKDGAPLPLVNTTMMYFSKKHSGGSSSTGLER* 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g2478 291 Pfam Thaumatin family 31 248 IPR001938 -
Tpr3g2478 291 SUPERFAMILY Osmotin, thaumatin-like protein 26 248 IPR037176 -
Tpr3g2478 291 PRINTS Pathogenesis-related protein signature 26 38 IPR001938 -
Tpr3g2478 291 PRINTS Pathogenesis-related protein signature 74 85 IPR001938 -
Tpr3g2478 291 PRINTS Pathogenesis-related protein signature 126 142 IPR001938 -
Tpr3g2478 291 PRINTS Pathogenesis-related protein signature 238 247 IPR001938 -
Tpr3g2478 291 ProSitePatterns Thaumatin family signature. 87 103 IPR017949 -
Tpr3g2478 291 CDD TLP-PA 26 247 - -
Tpr3g2478 291 ProSiteProfiles Thaumatin family profile. 24 248 IPR001938 -
Tpr3g2478 291 PANTHER PATHOGENESIS-RELATED THAUMATIN SUPERFAMILY PROTEIN 5 259 - -
Tpr3g2478 291 PANTHER OS03G0233200 PROTEIN 5 259 IPR001938 -
Tpr3g2478 291 Gene3D Thaumatin 25 248 IPR037176 -
Tpr3g2478 291 SMART tha2 27 248 IPR001938 -
Tpr3g2478 291 PIRSF PR5 1 281 IPR001938 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g2478 Tpr-Chr3 23755418 23763254 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g2478 6 248 Receptor kinase-like Gene Family AT5G38280 52.245 2.31e-87 272
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g2478 - - ccaj:109798931 512.301