Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g2462 ATGGAAACTCGTAGTCGGAAGCGGGCGGAGGCTTCCTCAGCTGCCCCTTCATCTTCTTCATCAAGTCCTAAAACTCGTTCCAACAAACGCGCTCGTGTTTCTTCTTCTTCTAATTCTACATCTTCCGCTACCGTAGCCACAGCAACAGCCACCAACACAGCGACGACAACAACATCCACTCCTGCTCGTTCAGCCAACACTCGTTCCCGCGCATCAAGAACAAAGGAAACTTTACCTCCTAAGAATCCGACTCCGATGGACTCCAACAATGAATCAGGCTCTGGCTCTAGACGTGATCGACGTGGTAAGAATTTGGAAAGGGATAATTCCGATAAGGGAAAGGAGAAAGAGCATGATGTTAGGATCAGGGAAAGAGAGGCCGAGAGAGGTTTGGCTTTGAATGTGGAAACTGGTGCTGGGGATGAAGATGATAACGATAGTGACAGTGGTATTTTGCGTCAGAATTTAACATCTGCTAGCAGTGCACTACAAGGTCTTCTTCGTAAACTCGGTGCTGGTTTGGATGATCTGCTACCGTCATCCGGGATGGGTTCTTCGTCTCATCAGAGTGGGAGGTTGAAGAAGATCCTGTTTGGGTTACGAGCTGATGGAGAAGAAGGTCGACAGGTTGAAGCTTTGACACAGCTTTGTGAAATGCTTTCTATTGGGACTGAGGATTCGCTTAGTACTTTCTCTGTTGATTCGTTTGTACCGGTGCTCGTGGGGTTGCTGAATCATGAGAGTAATCCTGATATTATGCTTCTTGCTGCAAGGGCGCTAACCCATCTCTGTGATGTGCTCCCTTCGTCTTGTGCTGCTGTTGTGCATTATGGAGCTGTTTCAATCTTCTGCGCGAGGTTGCTCACTATAGAGTATATGGACTTAGCTGAACAGTCCCTTCAAGCTCTAAAGAAGATATCTCAGGAGCACCCAACTGCATGCCTACGAGCTGGGGCTCTCATGGCCGTACTCTCTTATCTGGACTTCTTCTCAACTGGAGTTCAGCGTGTTGCATTGTCTACTGCTGCAAATATGTGCAAGAAGCTTCCTTCAGATGCATCTGACTTTGTGATGGAAGCTGTTCCTCTTTTGACAAACCTCCTTCAGTACCATGATTCAAAGGTCCTGGAGCATGCATCTGTTTGTTTGACTCGAATAGCTGAAGCATTTGCATCATCTTCAGACAAATTAGATGAATTATGCAATCATGGACTGGTAACACAAGCTGCCTCCCTCATTTCTAACAGCAGTTCTGGAGGTGGACAGGCTTCTCTCAGTACGCCAACATATACTGGTTTAATCCGACTTCTTTCAACATGCGCAAGCGGGTCCCCTCTTGGAGCTAAAACTCTGCTTCTGCTTGGAATTAGTGGTATTCTTAAAGACATTCTCTCTGGTTCTGGAGTTTCTTCTAATGCCTCAGTTTCTCCTGCATTAAGCAGGCCACCAGATCAGATATTTGAGATTGTGAACCTGGCAAATGAGCTTCTCCCCCCATTGCCACAAGGGACTATTTCCCTCCCTGCCAGCACCAACTTTGTGAAGGGTCCGGTTATAAAAAAGTCTCCTGCTGGCAGTTCTGTGCAACAAGAAGACACAAATGGAGATGTTCCTGAGATATCGGCTCGTGAGAAGCTATTAAATGAACAGTCTGAGCTGCTTAGGCAATTTGGGATGGATCTCCTCCCAGTTTTAATACAGATTTATGGTTCTAGTGTCAATATACCTGTTCGGCACAAATGTCTTTCGGTCATTGGAAAGTTGATGTATTTCAGTGAAGCAGAGATGATCCAGTCTTTGTTAAGCGTGACAAATATATCAAGTTTCTTAGCTGGAGTCTTGGCATCAAAAGATTCACATGTATTGCTACCTGCCTTGCAAATTGCCGAAATTCTTATGGAAAAGCTGCCCGAGACATTCTCTAAGATGTTTATCAGAGAAGGTGTCGTCCATGCTGTGGACCAACTTATTTTGCCCGGAAATTCAACAATTGTCTCTTCGGCAGAGAAGGATAATGATTCTACGCCTGGAGCATCTTCTCGCCCTAGGCGTAATAGGCGACGCTCTGGAAACTCCAATCCTGATGGAAATTCTTTGGAAGATATCAAGAGTCCTGTTTCAGTAAATGTTGGTTCACCTCCAAGTTCGTCAAATATTCCAACAGTAAATTCTAGTATCCGGTTATCTGTTAGCGCAGCTGCAAAAACTTTTAAAGATCAGTACTTTCCTTCAGATCCTGGGGCTGTTGTGGGTGTTACTGATGATCTTTTGCATCTGAAAAATCTTTGCATGAAGTTAAATGCTGGTGTTGACGACCAAAGAACTAATGGTAAGGGGAAATCTAAAACTTCTGGATTTGGTATGGAGGAGTGTCTAATTGGCATCATATCTGACATGCTAAAGGAACTTGGCAAAGGAGATGGTGTATCCACTTTTGAATTTATTGGTAGCGGTGTTGTTGCAGCTTTGCTGAATTATTTTTCTTGCGGGTATTTTGCTAAAGATAAACCCTCAGAAACCCACCTACCTAAGCTTCGCAAACAAGCACTTTCAAGGTTTAAGTCATTTATTACTGTTGCACTGCCTGCTACTATTGACAATAAGGATGTAACTCCTATGACTGTCTTGGTTCAAAAACTTCAAAATGCTTTGTCCTCCATGGAGCGTTTCCCTGTTATGCTGAGTCAAGCACCAAGGTCATCCAGTGGAAGTACACGCCTCGGACTAAGTGCATTATCCCAGCCCTTCAAATTGCGTCTTTGTCGAGCCCAGGGGGAAAAGTCACTTAAGGATTACTCAAACAATGTTGTATTGATTGATCCATTAGCTAGTTTAGCAGCCATTGAGGAATTTCTTTGGCCTCGTATCCAGCGAAGTGAATCTGTTCAGAAGTCCACTGCACCTGCTGGGAATTCTGAATCTGGGACAAGTCCTGCAGGAGCTGGTGTTCCACCTCCTTCTACCTCTACCCCGTCCACTACCCGTCGTCATTCTACGAGATCCAGACCATCTGCTAGTTTAGGGGATACCCCCAAAAAAGAGTTATCTCAAGATAAAACCTCGAGCTCATCTAAGGGTAAGGGAAAAGCTGTATTAAAGCCTGCACAAGAGGAGGGAAGAGGACCTCAAACCAGGAATGCTGCACGCAGAAGAGCAGCTCTTGATAAAGATGTTCAAATGAAGCCTGCAAATGGGGATTCTACTTCTGAGGATGAAGATTTAGATATATCTCCTGTTGAAATTGATGAGGCTTTGGTCATCGAAGACGATGATGAAATTTCTGACGATGAGGATGATGACCATGAAGACATGCTGAGAGATGACTCCCTTCCTGTTTGCGTACCTGACAAAGTACATGATGTGAAATTGGGTGACTCAGCTGAGGAGAGTACTGTTACTCCTGCAACTAATGAAGGACAGACTAATGCAGCTTCTGGTTCTAGTAGCAAAGTTGGTTCAGTAAGGGGATCAGACACTACAGATTTTAGGGGTGGCTATTCTTCTAGCTCTCGAGGTGCAATGTCATTTGCTGCTGCTGCCATGGCTGGACTTGGATCTGCCAATAGCAGAGGAATCAGGGGTGGCAGAGATCGGCAAGGGCGTCCATTGTTTGGTAGTTCTAGTGATCCTCCGAAGTTAATATTCACTGCTGGTGGGAAACAACTGAACAGGCAGCTGACTATTTATCAAGCAGTTCAAAGACAGCTTGTACTAGATGAAGATGACGATGAGAGATTTGCTGGCAGTGACTTTGTGTCTAACGATGGAAGCAGGATGTGGGGTGACATTTTCATAATAAATTATCAGAAGGCAGACAGCCAAACAGATAAGGCTTCCCCAGTAGGCCCAAGTTCTAACACTTCAAAATCTACTAAATCTGGGTCTGTATCAAATTGCAGTTCTGATGTCAAACTGCATCAGTCATCTGTAGTAGATAGTATCTTACATGGAGAATTGCCTTGTGAGCTAGAGAAATCTAATCCAACATACGACATATTGGCTCTATTACGTGTGCTGGAGGGTTTGAACCAGCTTGCACCTCGTTTGAGGGCCCAAGTGGCTACCGATAGTTTTGCTGAGGGAAAATTTTTGGATCTAGATGAGCTAGTTGTTGCCACAGGTTCTAAGGTTCCTCCAGAGGAATTTATAAGCAGCAAGCTTACTCCAAAATTAGCTAGGCAGATACAAGATGCCCTTGCCCTATGCAGTGGGAGTCTTCCCTCATGGTGTTATCAGTTAACTAAAGCGTGCCCTTTTTTGTTTCCATTTGAGATCCGAAGACAATACTTCTATTCAACTGCCTTCGGGTTATCTCGTGCACTGTATCGACTCCAACAGCAGCAAGGTGCCGATGGTCATGGATCAACAAATGAAAGAGAGGTTAGGGTTGGAAGACTGCAGCGCCAAAAGGTTCGTGTCTCTCGTAACCGCATTTTGGATTCCGCTGCTAAAGTGATGGAAATGTATTCCAGCCAAAAGGCTGTACTTGAAGTAGAATATTTTGGTGAAGTTGGCACTGGCCTTGGTCCGACCCTTGAGTTCTATACACTTCTAAGTCACGACTTACAAAAAGTTGGACTTCAGATGTGGAGATCAGGTTCTGATCAAATGGAAATTGATGGAGATGAAAAGAAAAAGAAAAGCAGTGAAGGCAATATTGCTAGAGATGGGGAACTTGTTCAAGCTCCTCTTGGTTTGTTTCCTCGTCCCTGGCCTGCAAATGCTGATGCATCTGAGGGTAGCCAGCTTTTTAAAGTGATTGAATATTTCCGGCTTTTAGGCCGCGTAGTTGCTAAAGCACTTCAAGATGGACGTCTATTAGATTTGCCATTATCTGTAGCATTTTATAAGCTTGTTATTGGTCAAGATCTTGATTTGCATGACATTCTTTACATTGATGCTGAACTTGGGAAAACTTTGCAAGAGTTGAATGCCCTTGTTTGCCGGAAACATAATATAGAGTCTATTGGTGGTGGTTATTCCGGTGCAGTAGCCAATTTGCATTACCGTGGAGCTCCAATTGCAGATCTCTGTTTGGATTTTACCCTTCCTGGTTATCCAGATTACACCTTGAAACCTGGGGATGAAATTGTTGACCTCAATAATCTAGAGGATTATATATCCATGGTCGTTGATGCCACTGTCAAGATTGGAATAACGCGCCAACTAGAAGCCTTTAGAGCAGGGTTCAATCAGGTTTTTGACATCTCATCTTTACAAACATTTACGCCTCACGAATTGGATTATTTGCTTTGTGGCCGTAGAGAATTGTGGAAGACGGAGACACTAGCTGATCATATAAAATTTGACCATGGGTATACTGCCAAAAGCCCCGCAATAGTGAATTTACTTGAAATTATGGGAGAGTTCACACCGGAGCAGCAGCGTGCCTTCTGTCAATTTGTTACTGGAGCACCTAAGCTACCGCCTGGTGGACTGGCTGTTCTAAATCCAAAATTAACGATTGTGAGAAAGCTCTCGTCAACTGCCGCTCATACGACATCCAATGGGAACGGACCTTCAGAAACAGCAGATGATGACTTGCCAAGTGTGATGACGTGTGCAAATTACCTGAAGCTTCCTCCTTATTCTACCAAGGAAATTATGTACAAGAAGCTAATGTATGCAATCAATGAAGGCCAGGGATCCTTTGACTTATCATGA 5664 0.4426 METRSRKRAEASSAAPSSSSSSPKTRSNKRARVSSSSNSTSSATVATATATNTATTTTSTPARSANTRSRASRTKETLPPKNPTPMDSNNESGSGSRRDRRGKNLERDNSDKGKEKEHDVRIREREAERGLALNVETGAGDEDDNDSDSGILRQNLTSASSALQGLLRKLGAGLDDLLPSSGMGSSSHQSGRLKKILFGLRADGEEGRQVEALTQLCEMLSIGTEDSLSTFSVDSFVPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVSIFCARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDASDFVMEAVPLLTNLLQYHDSKVLEHASVCLTRIAEAFASSSDKLDELCNHGLVTQAASLISNSSSGGGQASLSTPTYTGLIRLLSTCASGSPLGAKTLLLLGISGILKDILSGSGVSSNASVSPALSRPPDQIFEIVNLANELLPPLPQGTISLPASTNFVKGPVIKKSPAGSSVQQEDTNGDVPEISAREKLLNEQSELLRQFGMDLLPVLIQIYGSSVNIPVRHKCLSVIGKLMYFSEAEMIQSLLSVTNISSFLAGVLASKDSHVLLPALQIAEILMEKLPETFSKMFIREGVVHAVDQLILPGNSTIVSSAEKDNDSTPGASSRPRRNRRRSGNSNPDGNSLEDIKSPVSVNVGSPPSSSNIPTVNSSIRLSVSAAAKTFKDQYFPSDPGAVVGVTDDLLHLKNLCMKLNAGVDDQRTNGKGKSKTSGFGMEECLIGIISDMLKELGKGDGVSTFEFIGSGVVAALLNYFSCGYFAKDKPSETHLPKLRKQALSRFKSFITVALPATIDNKDVTPMTVLVQKLQNALSSMERFPVMLSQAPRSSSGSTRLGLSALSQPFKLRLCRAQGEKSLKDYSNNVVLIDPLASLAAIEEFLWPRIQRSESVQKSTAPAGNSESGTSPAGAGVPPPSTSTPSTTRRHSTRSRPSASLGDTPKKELSQDKTSSSSKGKGKAVLKPAQEEGRGPQTRNAARRRAALDKDVQMKPANGDSTSEDEDLDISPVEIDEALVIEDDDEISDDEDDDHEDMLRDDSLPVCVPDKVHDVKLGDSAEESTVTPATNEGQTNAASGSSSKVGSVRGSDTTDFRGGYSSSSRGAMSFAAAAMAGLGSANSRGIRGGRDRQGRPLFGSSSDPPKLIFTAGGKQLNRQLTIYQAVQRQLVLDEDDDERFAGSDFVSNDGSRMWGDIFIINYQKADSQTDKASPVGPSSNTSKSTKSGSVSNCSSDVKLHQSSVVDSILHGELPCELEKSNPTYDILALLRVLEGLNQLAPRLRAQVATDSFAEGKFLDLDELVVATGSKVPPEEFISSKLTPKLARQIQDALALCSGSLPSWCYQLTKACPFLFPFEIRRQYFYSTAFGLSRALYRLQQQQGADGHGSTNEREVRVGRLQRQKVRVSRNRILDSAAKVMEMYSSQKAVLEVEYFGEVGTGLGPTLEFYTLLSHDLQKVGLQMWRSGSDQMEIDGDEKKKKSSEGNIARDGELVQAPLGLFPRPWPANADASEGSQLFKVIEYFRLLGRVVAKALQDGRLLDLPLSVAFYKLVIGQDLDLHDILYIDAELGKTLQELNALVCRKHNIESIGGGYSGAVANLHYRGAPIADLCLDFTLPGYPDYTLKPGDEIVDLNNLEDYISMVVDATVKIGITRQLEAFRAGFNQVFDISSLQTFTPHELDYLLCGRRELWKTETLADHIKFDHGYTAKSPAIVNLLEIMGEFTPEQQRAFCQFVTGAPKLPPGGLAVLNPKLTIVRKLSSTAAHTTSNGNGPSETADDDLPSVMTCANYLKLPPYSTKEIMYKKLMYAINEGQGSFDLS* 1888
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g2462 1887 MobiDBLite consensus disorder prediction 665 719 - -
Tpr3g2462 1887 MobiDBLite consensus disorder prediction 1043 1057 - -
Tpr3g2462 1887 MobiDBLite consensus disorder prediction 665 679 - -
Tpr3g2462 1887 Pfam HECT-domain (ubiquitin-transferase) 1517 1887 IPR000569 GO:0004842
Tpr3g2462 1887 PANTHER HECT E3 UBIQUITIN LIGASE-RELATED 91 1887 - -
Tpr3g2462 1887 MobiDBLite consensus disorder prediction 1069 1104 - -
Tpr3g2462 1887 MobiDBLite consensus disorder prediction 1129 1167 - -
Tpr3g2462 1887 CDD HECTc 1469 1882 IPR000569 GO:0004842
Tpr3g2462 1887 SMART arm_5 350 388 IPR000225 GO:0005515
Tpr3g2462 1887 SMART arm_5 307 347 IPR000225 GO:0005515
Tpr3g2462 1887 SMART arm_5 224 265 IPR000225 GO:0005515
Tpr3g2462 1887 Gene3D - 543 670 IPR011989 -
Tpr3g2462 1887 MobiDBLite consensus disorder prediction 960 1006 - -
Tpr3g2462 1887 MobiDBLite consensus disorder prediction 93 131 - -
Tpr3g2462 1887 MobiDBLite consensus disorder prediction 1275 1296 - -
Tpr3g2462 1887 SUPERFAMILY ARM repeat 193 660 IPR016024 -
Tpr3g2462 1887 MobiDBLite consensus disorder prediction 691 719 - -
Tpr3g2462 1887 MobiDBLite consensus disorder prediction 10 92 - -
Tpr3g2462 1887 MobiDBLite consensus disorder prediction 1 147 - -
Tpr3g2462 1887 SMART hect_3 1480 1887 IPR000569 GO:0004842
Tpr3g2462 1887 SUPERFAMILY Hect, E3 ligase catalytic domain 1461 1880 IPR035983 GO:0004842
Tpr3g2462 1887 MobiDBLite consensus disorder prediction 1121 1167 - -
Tpr3g2462 1887 Gene3D Hect, E3 ligase catalytic domains 1410 1649 - -
Tpr3g2462 1887 Gene3D - 183 500 IPR011989 -
Tpr3g2462 1887 MobiDBLite consensus disorder prediction 960 1107 - -
Tpr3g2462 1887 PANTHER E3 UBIQUITIN-PROTEIN LIGASE TRIP12 91 1887 IPR045322 GO:0006511|GO:0061630
Tpr3g2462 1887 Gene3D Hect, E3 ligase catalytic domain 1759 1885 - -
Tpr3g2462 1887 ProSiteProfiles HECT domain profile. 1587 1887 IPR000569 GO:0004842
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g2462 Tpr-Chr3 23517139 23526954 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g2462 K10590 - gmx:100783336 2940.6