Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g2461 ATGTGGCCGGATATTCTTGAAAAGGCAAGACATGGAGGAATAAACTTAATCCAAACGTACGTGTTTTGGAACGCTCATGAGGCTGAAAAAGGCAAGTTAGTTTGGGAAGACAGATATGACATTGTAAAGTTCATTAAACTCGTACACGAGAAAGGAATGTATGTTACCCTTAGAGTTGGTCCTTTCATCCAAGCTGAATGGAATCACGGAGGACTTCCATATTGGCTAAGAGAGGTTCCTGACATCATTTTCCGATCTAACAACGAACCTTTCAAGAAACACATGAAAGAATATGTATCAACTGTTATTGATAAAATGAGTAAAGAAAAACTCTTTGCTCCACAAGGAGGCCCTATCATCTTAGCACAGATTGAGAATGAGTATAACCATATCCAACTTGCTTATGAAGCTGATGGAGATAACTATGTTCAATGGGCTGCAAAAATGGCAATTTCACTAAATGTTGGAGTTCCATGGGTCATGTGCAAGCAAAAGGATGCTCCTGATCCCGTGATTAATGCATGCAATGGAAGGCATTGTGGTGATACATTCACAGGTCCAAACAAACCATACAAACCAGCCATATGGACTGAAAACTGGACTGCTCAGTATAGAGTATTTGGAGATCCACCATCTCAAAGATCTGCAGAAGACATTGCCTTCTCCGTTGCTCGCTTCTTCTCTAAGAATGGATCTTTAGTCAACTACTATATGTATCATGGTGGAACAAATTTTGGTAGAACAAGCTCTGCCTTTACAACAACCCGCTATTACGATGAAGCTCCTCTTGATGAGTTTGGTTTGCAGAGAGATCCAAAATGGAGTCACTTGAGAGATGCACACAAAGCTGTGAACCTGTGTAAAAAGGCTCTACTCAGTGGTGAACCTACCACACAGAAACTTAGCCAGTTTCATGAGATTATAACCTTTGAAAAGCATGGAGGTGGAGGTAATGTATGTGCTGCTTTCATCACTAACAACCACACCAAAACACCAAAAACAATACAATTCAGAGGTACAAACTATTATTTGCCACCACGTTCGATCAGCGTTCTTCCTGATTGCAAGACTGTGGTCTTCAACACACAAAATATTGCTTCACAACACAATTCAAGAAACTTCGAGAAGTCAAAGACTGCAAATAATTTCAAGTGGGAGGTGTTTCATGAGCCAATTCCAACTGCTGCGGAATTGCCAGCCAAACAAAAACTTCCTGCAGAACTTTACAGCTTGCTTAAGGACACCACTGATTATGGATGGTACACCACAAGTGTGGAGTTGGGTCCAGAAGACTTACCAAAGAAGAATGACGTATCGCCTGTTCTTCGTATTCTGAGTCTTGGACATTCACTACTTGCCTTTGTAAATGGACAATTCATTGGATCTAATCATGGAAGCCATGAAGAGAAAGGTTTTGAATTCCAGAAACCTGTAAGTTTCAAGGTTGGAGTTAACCAAATAGCTATCTTGGGTTGCTTAGTAGGATTACCCGATAGTGGAGCATACATGGAACACAGGTATGCCGGACCGAAGACTATCACCATCCTTGGTTTGAATTCCGGAAAAATTGATCTCACTATTAATGGTTGGGGAACACAGATTGGTCTCAAAGGTGAGAAACTTAGCATTTTCACTGAGGAGGGATCAAAGAAAGTAGAATGGAAAGATTTAAAGGGACCTCCATCAACTCTCTCTTGGTACAAGACAAATTTTGACACTCCGGAGGGAAGGGAACCAGTTGCTATCGGAATGGATGGTATGGGAAAAGGAATGGTTTGGATCAATGGCCAAAGCATTGGTCGTCACTGGTTGAGCTACCTCTCTCCTCTTGGAAAGCCTACTCAGTCAGAGTACCACATTCCAAGATCTTTCCTTAAACCAAGAGGCAACAACTTGCTTGTTATATTGGAGGAAGAGGCAGTAATTCCAGATAAGGTTGCCATCCTAAATGTGAACAGAGATACAGTATGTAGTATAATCACAGAGAATCACCCTCCCAATATTAAGGAATTCTCAAGTAAGAAAAAAGAACTTAAACCTACTTCGGCGAATCTGATTCCAGAAGCTATAATCAAGTGCCCAAACAAAAAAACCATTTTGGCTGTTGAGTTTGCAAGTTTTGGTGATCCTACTGGTTTCTGTGGAGGCTTTATTATGGGAAAATGCCATGCACCTGCCACCAAGAAGATTGTTGAACAGCAATGCTTAGGAAAAGAAGGTTGTGCTGTTCCAATGACCAAAGCAAGCTTCACCGGTGGTAATGATGGATGCCCAGATGTGATGAAGACACTTGCAATACAAGTTAAGTGTGGCTACAAGAATTAG 2325 0.412 MWPDILEKARHGGINLIQTYVFWNAHEAEKGKLVWEDRYDIVKFIKLVHEKGMYVTLRVGPFIQAEWNHGGLPYWLREVPDIIFRSNNEPFKKHMKEYVSTVIDKMSKEKLFAPQGGPIILAQIENEYNHIQLAYEADGDNYVQWAAKMAISLNVGVPWVMCKQKDAPDPVINACNGRHCGDTFTGPNKPYKPAIWTENWTAQYRVFGDPPSQRSAEDIAFSVARFFSKNGSLVNYYMYHGGTNFGRTSSAFTTTRYYDEAPLDEFGLQRDPKWSHLRDAHKAVNLCKKALLSGEPTTQKLSQFHEIITFEKHGGGGNVCAAFITNNHTKTPKTIQFRGTNYYLPPRSISVLPDCKTVVFNTQNIASQHNSRNFEKSKTANNFKWEVFHEPIPTAAELPAKQKLPAELYSLLKDTTDYGWYTTSVELGPEDLPKKNDVSPVLRILSLGHSLLAFVNGQFIGSNHGSHEEKGFEFQKPVSFKVGVNQIAILGCLVGLPDSGAYMEHRYAGPKTITILGLNSGKIDLTINGWGTQIGLKGEKLSIFTEEGSKKVEWKDLKGPPSTLSWYKTNFDTPEGREPVAIGMDGMGKGMVWINGQSIGRHWLSYLSPLGKPTQSEYHIPRSFLKPRGNNLLVILEEEAVIPDKVAILNVNRDTVCSIITENHPPNIKEFSSKKKELKPTSANLIPEAIIKCPNKKTILAVEFASFGDPTGFCGGFIMGKCHAPATKKIVEQQCLGKEGCAVPMTKASFTGGNDGCPDVMKTLAIQVKCGYKN* 775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g2461 774 Pfam Beta-sandwich domain in beta galactosidase 291 365 IPR041392 -
Tpr3g2461 774 Pfam Glycosyl hydrolases family 35 1 283 IPR031330 -
Tpr3g2461 774 Gene3D - 336 505 - -
Tpr3g2461 774 SUPERFAMILY Galactose-binding domain-like 527 671 IPR008979 -
Tpr3g2461 774 Gene3D - 533 662 - -
Tpr3g2461 774 Pfam Galactose binding lectin domain 691 770 IPR000922 GO:0030246
Tpr3g2461 774 SUPERFAMILY (Trans)glycosidases 1 287 IPR017853 -
Tpr3g2461 774 PANTHER BETA-GALACTOSIDASE RELATED 1 767 IPR001944 GO:0004553|GO:0005975
Tpr3g2461 774 Gene3D Glycosidases 1 287 - -
Tpr3g2461 774 ProSiteProfiles SUEL-type lectin domain profile. 683 771 IPR000922 GO:0030246
Tpr3g2461 774 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 116 128 IPR019801 GO:0004553|GO:0005975
Tpr3g2461 774 Gene3D - 686 774 IPR043159 -
Tpr3g2461 774 PANTHER GLYCOSIDE HYDROLASE FAMILY 35 PROTEIN 1 767 - -
Tpr3g2461 774 SUPERFAMILY Galactose-binding domain-like 349 510 IPR008979 -
Tpr3g2461 774 Pfam Beta-galactosidase jelly roll domain 554 636 IPR025300 -
Tpr3g2461 774 PRINTS Glycosyl hydrolase family 35 signature 2 20 IPR001944 GO:0004553|GO:0005975
Tpr3g2461 774 PRINTS Glycosyl hydrolase family 35 signature 57 76 IPR001944 GO:0004553|GO:0005975
Tpr3g2461 774 PRINTS Glycosyl hydrolase family 35 signature 114 129 IPR001944 GO:0004553|GO:0005975
Tpr3g2461 774 PRINTS Glycosyl hydrolase family 35 signature 195 210 IPR001944 GO:0004553|GO:0005975
Tpr3g2461 774 PRINTS Glycosyl hydrolase family 35 signature 232 247 IPR001944 GO:0004553|GO:0005975
Tpr3g2461 774 PRINTS Glycosyl hydrolase family 35 signature 251 267 IPR001944 GO:0004553|GO:0005975
Tpr3g2461 774 PRINTS Glycosyl hydrolase family 35 signature 562 576 IPR001944 GO:0004553|GO:0005975
Tpr3g2461 774 PRINTS Glycosyl hydrolase family 35 signature 589 605 IPR001944 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g2461 Tpr-Chr3 23508222 23512692 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g2461 1 771 Glycoside Hydrolase AT2G16730 58.656 0.0 983
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g2461 - - aprc:113864946 1290.4