Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g2445 ATGGAACTTAACAAATTCTGTTTCAACCACCACCACCGTTCTCTCCGATTAACAACTTCTCCTCTTTCTCTTTCTCCTCCTCGCTCTCACTTTCTCGGTTCCAATCACACTCTTCTTAAACCACCTGTTACTTCAGCTTCAACTTCATCAATTCGGTTCCGTAATAAACGTAGCAATAGGTTAGGGTTTCTTCGTCTTCATTCTCCGCGGTTTGTGTTTAAGGCTTCTTTAGGCACTCACTCGCTTATTGTAGTTGTTGTCGTTGTTACTTTATCTGCTGTTTCTTTCCTTCATTTCACTCTCAATAACAAAAAGAAGAAGAATCACAATCAGGGACATGCAAAATTTGCATTATCACCACAAGGAAGTAATGCTGGGAACCAGGTTATTGATAGACAGATTCTTGGTTTTCCAGAATTTCAAAGGGATAACTCACTGACCGAAATTGGGAAGTTAAATGGTCACATCGGAAAGGACAACCATGTTTTTGAGGACCAAGAGGCCCCCCTTCAGTTTTTACAATCTACTATGGTGCAGGAAACAGCCTTAAAGACTCAGACATTAGATTCATCTTCGTCCGTTCTTGACTCTGGTGTCAATGGTAACAGTTCCGAGGTATTAGAGGAGCCTTTTTTATCTGTGGCTTTCCAATCAAGTTCATTGGAACCTATAGCTTTTGCTGAGGAAATCACTTTACAAGTTGAAGAAAATCAAGACGCTGCTGATTCTGATCTTGAGTTGCCTTTGGGTACGGTCAAACCTGAGCATAATGTTTCTTCTGGTGGTTTAGACAATGCGCTAGATACAATCTATGAACATACTAAAGAAAACATTGACCTTCGAGCCATCAAAAGTGATGTCCTTTTTGGTGAATCTGTTAGGGATGGGCTGTACATGTTTTATGAGGACAATAATTCTGCATCTGGATCCATGACATCCTTGAGTAGTATCAAGTCATTTTCTCCCCGTGCTTCTTCTGTGAATAGCACAGGACTGACATCAGCTATAAGAAATATCAGCCTAAATGGATTAGGATCATCTGCCGACATTTCTCTTCAACATGCAGAGTACGTTGAAGAAGCAGTTGAAATTTCCAGTCACAAAGAAGGTCACCCTCCACAACATTTAAGTCAAAACTTGAGGAAAACCAGCACATATCCGAGAGACAGGGAAAGGAACTATATGGATCATAATAGTAACAATGTTTTGCCTCATAGTTCCCACATCAGGGCGCATGTCGATCAGCAAGATGATCAAATCAGGGTCCACGATGGTCAGGAAATTGACCCTTCAGAGGATCTAAGAAAATATAATAACTTGCTAAAAGTTGGGAGGTTACGTAAATGCGTAGAATTGCTTAAGGATATGGAAATGAAGGGTTTATTAGATATGACTAAGGTTTATCATGCCAAGTTTTTCAACATCTGCAAGAAACAAAAAGCTGTTAAAGAAGCTTTTGATTATGTTAGGCTTATTCCAAATCCAACACTGAGTACATTTAATATGCTTATGTCAGTGTGTTCAAGCTCCCAAGATTCAGAAGCGGCTTTCCAAGTTATGCAGCTTGTTAAGGATGCTCGACTAGATCCTGATTGCAAACTTTATACCACTCTGATATCAACTTGTGGCAAGAGTGGGAAAGTTGATCTAATGTTTGAAGTGTTTCACACGATGGTTAATTTTGGAGTGGAACCTAACGTTCATACCTACGGGGCACTTATTGATGGTTGTGCTAGAGCTGGTCAAGTAGCTAAAGCATTTGGTGCTTATGGGATTATGAGGTCAAAGAATGTGAAGGCAGATCGTGTTGTTTTCAATGCACTTATAGCTGCATGTGCACAGTCAGGAGCAATGGCTCGTGCCTTTGATGTGATAGGAGAAATGGAGGCTGAAATACAGCCTATTGAGCCAGACCACGTAACTATTGGTACATTGATGAAGGCATGTGCAAAGGCTGGTCAGGTTGAACGAGCACGTGAAGTGTATAAGATGATACAAAAATATAATATAAAGGGATCTTCAGAAGTTTACACAATTGCAATTAATTCTTGTAGTCAAACCGGAGATTGGGAATTTGCACGTAATGTATACGACGACATGACCCAGAAAGGGGTGCTCCCTGATGAGATGTTTCTGAGTGCACTAATAGATGTTGCCGGGCATGCTAAAAAGCTGGAGGCTGCCTTTGATATACTACAAGAAGCCCGGAAAGAAGGAAAACAAATTGGAATAATGGCATATAGCTCATTGATGGGCGCCTGTAGCAAGGCAAAAAATTGGCAGAAAGCATTGGAGCTATACGAATATCTTAAATCTCTTAAATTGGTGCGAACAGTTTCAACTGTTAATGCTTTGCTCACTGCACTTTGTGACGGGGATCAATTTCAGAAGGCTTTGGAGGTTTTATCCGAAATGAAAGGATTAGGATTGCGCCCAAACAGTATCACATTCTCAATACTTATTGTGGCAAGTGAGAAGAAGGATGATATGGAAGCAGCTCAAATGCTCCTTTCTCAAGCCAAAAAGGATGGTGCATCCCCTACTCTCATCATGTGTCGATGCATAATTGGAATGTGCCTGCGGAGATTTGAGAAGGCTTGCCTTGCTGGTGAATCTGTTATATCTTTTGACTCAGGACGGCCACAAGTTAATAATGAATGGACATCACTGGCTTTAATGGTGTATCGTGAAACAATCGGAGCTGGTGAAAAGCCTACAAGTGAAATATTGTCACAAATTCTGGGATGCATGAAATTCCCTTATGATACATATGTGAAAAATAGACTTGTTGAGAACCTGGGAGTAAGTGTTGAAAACTCAAGAATGGAAAACCTCTGTTCATTGATAGATGGATTTGGCGAATATGATCCTCGTGTTTTTTCAATACTTGAGGAAGCTGCTTCATACGGAGTTGTTCCATCTGTATCATTTAAAATGAATCCTATTGTTATTGATGCTAAAGAATTGGATGCTCTTACTGCTGAGGTATACCTCTTAACTATTTTGAAAGGTCTCAAGCATCGACTAGCAGCAGGTGCAAAACTACCCAATATAATCATTTTATTGCCTGTAGAAGAAGCAAAAGTTTCATCTCCCGATGGGGAAAAGACTATTATACTTGCAGAAAGAGGTGGCCAAGCAGTTGCAGCGTTGTTTAGGAGGCTTCATATTCCTTACCAGGGTAATGAATCAAATGGGAAACTTCGATTAAATTATCTGGGCCTGGTAAAGTGGTTTCAGCCAAAGATTGCGTCTCCATTCATCAGTTTACAAGGTGACTGGAGCTCATCCCAATCACGACTCCGCAAAAATATTAGCAATCAGCAGCGAAACATTCGAACTGGCAATCTATCTTTGGACTAA 3363 0.405 MELNKFCFNHHHRSLRLTTSPLSLSPPRSHFLGSNHTLLKPPVTSASTSSIRFRNKRSNRLGFLRLHSPRFVFKASLGTHSLIVVVVVVTLSAVSFLHFTLNNKKKKNHNQGHAKFALSPQGSNAGNQVIDRQILGFPEFQRDNSLTEIGKLNGHIGKDNHVFEDQEAPLQFLQSTMVQETALKTQTLDSSSSVLDSGVNGNSSEVLEEPFLSVAFQSSSLEPIAFAEEITLQVEENQDAADSDLELPLGTVKPEHNVSSGGLDNALDTIYEHTKENIDLRAIKSDVLFGESVRDGLYMFYEDNNSASGSMTSLSSIKSFSPRASSVNSTGLTSAIRNISLNGLGSSADISLQHAEYVEEAVEISSHKEGHPPQHLSQNLRKTSTYPRDRERNYMDHNSNNVLPHSSHIRAHVDQQDDQIRVHDGQEIDPSEDLRKYNNLLKVGRLRKCVELLKDMEMKGLLDMTKVYHAKFFNICKKQKAVKEAFDYVRLIPNPTLSTFNMLMSVCSSSQDSEAAFQVMQLVKDARLDPDCKLYTTLISTCGKSGKVDLMFEVFHTMVNFGVEPNVHTYGALIDGCARAGQVAKAFGAYGIMRSKNVKADRVVFNALIAACAQSGAMARAFDVIGEMEAEIQPIEPDHVTIGTLMKACAKAGQVERAREVYKMIQKYNIKGSSEVYTIAINSCSQTGDWEFARNVYDDMTQKGVLPDEMFLSALIDVAGHAKKLEAAFDILQEARKEGKQIGIMAYSSLMGACSKAKNWQKALELYEYLKSLKLVRTVSTVNALLTALCDGDQFQKALEVLSEMKGLGLRPNSITFSILIVASEKKDDMEAAQMLLSQAKKDGASPTLIMCRCIIGMCLRRFEKACLAGESVISFDSGRPQVNNEWTSLALMVYRETIGAGEKPTSEILSQILGCMKFPYDTYVKNRLVENLGVSVENSRMENLCSLIDGFGEYDPRVFSILEEAASYGVVPSVSFKMNPIVIDAKELDALTAEVYLLTILKGLKHRLAAGAKLPNIIILLPVEEAKVSSPDGEKTIILAERGGQAVAALFRRLHIPYQGNESNGKLRLNYLGLVKWFQPKIASPFISLQGDWSSSQSRLRKNISNQQRNIRTGNLSLD* 1121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g2445 1120 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 601 631 IPR002885 -
Tpr3g2445 1120 Pfam Pentacotripeptide-repeat region of PRORP 498 639 IPR033443 -
Tpr3g2445 1120 Pfam Pentacotripeptide-repeat region of PRORP 646 788 IPR033443 -
Tpr3g2445 1120 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 673 707 IPR002885 -
Tpr3g2445 1120 MobiDBLite consensus disorder prediction 365 385 - -
Tpr3g2445 1120 Pfam PPR repeat 440 461 IPR002885 -
Tpr3g2445 1120 Pfam Pentatricopeptide repeat domain 801 859 IPR002885 -
Tpr3g2445 1120 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 531 565 IPR002885 -
Tpr3g2445 1120 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 638 672 IPR002885 -
Tpr3g2445 1120 Coils Coil 823 843 - -
Tpr3g2445 1120 Gene3D Tetratricopeptide repeat domain 435 631 IPR011990 GO:0005515
Tpr3g2445 1120 Gene3D Tetratricopeptide repeat domain 720 898 IPR011990 GO:0005515
Tpr3g2445 1120 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 566 600 IPR002885 -
Tpr3g2445 1120 TIGRFAM PPR: pentatricopeptide repeat domain 568 601 IPR002885 -
Tpr3g2445 1120 TIGRFAM PPR: pentatricopeptide repeat domain 676 709 IPR002885 -
Tpr3g2445 1120 TIGRFAM PPR: pentatricopeptide repeat domain 534 567 IPR002885 -
Tpr3g2445 1120 TIGRFAM PPR: pentatricopeptide repeat domain 640 671 IPR002885 -
Tpr3g2445 1120 TIGRFAM PPR: pentatricopeptide repeat domain 746 777 IPR002885 -
Tpr3g2445 1120 TIGRFAM PPR: pentatricopeptide repeat domain 781 813 IPR002885 -
Tpr3g2445 1120 Gene3D Tetratricopeptide repeat domain 632 704 IPR011990 GO:0005515
Tpr3g2445 1120 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 743 777 IPR002885 -
Tpr3g2445 1120 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 778 812 IPR002885 -
Tpr3g2445 1120 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN MRL1, CHLOROPLASTIC 75 1120 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g2445 562 860 Glycosyltransferase AT1G05670 24.667 2.74e-27 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g2445 - - gmx:100814164 1550.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g2445 3 23378963 23390895 Tpr3g2445 3 23378963 23390895 ECH