Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g2374 ATGACACTCAAACTCTCACTACACTTTCATCACACCTCTCCCCTCAAAATCTTCAACTTCACATCACCTTCTCACTTACCTCTCCGCCGTTTCCACGTAACTAATTCCCTTCTTAACGACACTGTTACTATTTCTTCAAACTTAGTCTTCGCGGCATCAAAACATCCTCGCATTGGGATTTTAACCACTTGCGTAGTTGGAAGTCATGAACAAAATGGCGAATCCGAAGATGAAGACTGTTGTGAAGAAATGTGCGAGATAAAAGAACTATCTGAGCAGAGTGTGTGGAATCAGATGAAGGAAATTGTGAAGTTTACTGGACCAGCTATCGGGTTATGGTTATGTGATCCACTCATGAGTCTCATTGATACCGCAGTTGTTGGTCAGGGAAGTTCAACTGAGCTAGCTGCTTTAGGTCCTGCAACAGTTGTTTGTGATTACATGACCTTAACTTTCATGTTTCTGTCGGTTGTTACATCCAATATAATTGCTACTGCCCTTGCTAAACAGGATAGAGAGGATGTGCAGCATCACTTGTCTATCCTGCTTTTTATTGGGTTGGCTTGTGGCTTGGTGATGCTTTTGTCTACAAAGTTATTCGGTGCAGCAACACTTTCCGCTTTTACTGGGCCAAAGAATGCACATGTAGTACCTGCAGCTAATACTTATGTGCAGATTCGAGCCTTGTCGTGGCCTGCTTTACTTGTTGGATGGGTGGCTCAGAGTGCAAGTCTTGGTATGAAAGATTCATGGGGACCCTTAAAGGCTTTGGCTGCTGCAAGTATTATAAATGGAATTGGTGATATAATTTTGTGCAGCTTTTTAGGCTATGGTATTGCAGGGGCAGCATGGGCTACAATGGCATCACAAGTTGTTGCTTCATATATGATGATTCAAACCCTAAATAAGAGGGGATACAATGCATATGCCTTCTCCGTTCCTTCATTGAAGGAATTTCGAACAATACTTGGTCTTGCTGCTCCTGTATATTTGACATCAATATCAAAGGTGGCTTTCTTTTCTCTACTTATATACATTGCTACATCAATCGGTACACAAACAATGGCCGCTCATCAAGTCATGATTCAAATCTACATGGCGTGTACAGTGTGGGGCGAACCTCTCTGCCAAACAGCACAATCATTTATGCCTGAGTTAATGTATGGAGTAAATAAGAATTTGGCAAAGGCCCGATTGCTACTAAGGTCACTAGTGATTATCGGAGCTATACTTGGATTGTTGTTAGGGATTATTGGAACATCTCTTCTTTGGTTATTCCCATACATATTTACATCTGATCAGATGGTCATCCAGAAGATGCATAGGACACTGATTCCGTTCTTTGTTGCACTAGCTGTGACACCCTCTACTCGCAGCCTGGAGGGAACATTGCTGGCAGGACAGGATTTAAGATTTTTTAGCTTGTCAACATGTGGATGCTTTTTTCTGGCTGCTCTATTATTATTGATCTTTAGTAGATATGGTTTGCAAGGATGTTGGTTTACCCTAGCTGGATTTCAGTGGGCTCGGTTTTCAGTGGCTCTTTTGCGCCTTGTTTCTCCTAACGGCATTTTATATTCGGGAGAGGCAAGTATAAACCAAAAGTTGAGGACCGTCTAG 1620 0.4216 MTLKLSLHFHHTSPLKIFNFTSPSHLPLRRFHVTNSLLNDTVTISSNLVFAASKHPRIGILTTCVVGSHEQNGESEDEDCCEEMCEIKELSEQSVWNQMKEIVKFTGPAIGLWLCDPLMSLIDTAVVGQGSSTELAALGPATVVCDYMTLTFMFLSVVTSNIIATALAKQDREDVQHHLSILLFIGLACGLVMLLSTKLFGAATLSAFTGPKNAHVVPAANTYVQIRALSWPALLVGWVAQSASLGMKDSWGPLKALAAASIINGIGDIILCSFLGYGIAGAAWATMASQVVASYMMIQTLNKRGYNAYAFSVPSLKEFRTILGLAAPVYLTSISKVAFFSLLIYIATSIGTQTMAAHQVMIQIYMACTVWGEPLCQTAQSFMPELMYGVNKNLAKARLLLRSLVIIGAILGLLLGIIGTSLLWLFPYIFTSDQMVIQKMHRTLIPFFVALAVTPSTRSLEGTLLAGQDLRFFSLSTCGCFFLAALLLLIFSRYGLQGCWFTLAGFQWARFSVALLRLVSPNGILYSGEASINQKLRTV* 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g2374 539 CDD MATE_DinF_like 98 520 IPR044644 -
Tpr3g2374 539 Pfam MatE 113 266 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Tpr3g2374 539 PANTHER PROTEIN DETOXIFICATION 46, CHLOROPLASTIC 38 530 - -
Tpr3g2374 539 PANTHER PROTEIN DETOXIFICATION 44, CHLOROPLASTIC-RELATED 38 530 IPR044644 -
Tpr3g2374 539 TIGRFAM matE: MATE efflux family protein 108 500 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g2374 Tpr-Chr3 22551001 22557217 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g2374 K03327 - mtr:MTR_4g071390 859.751
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g2374 3 22551001 22557217 Tpr3g2374 3 22551001 22557217 ECH