Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g2362 ATGATTTTGATTGGATCGTGCAGTGAGCGAGCGAGCGAGCGAGAGAAGATGTTAACGAAGTTTGAGACGAAAAGTAACAGAGTTAAGGGATTGAGTTTCCATAGCAAAAGACCATGGATACTTGCGAGTCTTCACAGTGGTGTGATCCAGCTATGGGATTATCGAATGGGAACGTTAATTGATAGATTTGATGAACATGATGGACCTGTTAGAGGCGTTCATTTTCACAATTCTCAACCGCTTTTTGTATCTGGAGGGGATGATTACAAGATCAAGGTCTGGAACTATAAGATGCATAGGTGTTTGTTCACTCTTCTAGGACACCTTGATTACATTCGTACTGTGCAATTTCATCATGAGAACCCATGGATTGTGAGTGCCAGTGATGATCAAACCATTCGCATCTGGAACTGGCAGTCACGTACCTGTATATCTGTTTTAACTGGGCACAACCACTATGTTATGTGTGCTTCATTCCATCCTAAGGAGGATATTGTTGTGTCAGCCTCCCTGGATCAGACTGTTCGTGTTTGGGATATTGGTTCTCTCAAAAGGAAGGCTGGACCTCCTTCCGATGATATTTTGCGATTGAGTCAGATGAACACCGATCTTTTTGGTGGTGTCGATGCCGTTGTTAAGTACGTGTTGGAAGGTCATGACCGAGGTGTTAACTGGGCTGCTTTTCATCCTACACTGCCTCTTATTGTCTCAGGAGCTGATGACCGTCAAGTGAAACTTTGGAGGATGAATGATACTAAGGCATGGGAAGTGGATACTTTGAGAGGTCACATGAATAATGTTTCATGTGTTATGTTCCATGCCAAACAGGACATCATTGTGTCCAATTCTGAGGATAAAAGTATTCGAGTATGGGATGCAACAAAGAGGACTGGAATTCAAACATTCCGCAGGGAACATGATCGATTTTGGATTCTCTCAACGCATCCTGAAATGAATCTGTTGGCAGCTGGCCATGACAGTGGCATGATAGTCTTCAAGCTGGAGAGGGAAAGGCCTGCCTTTGCAGTTAGTGGTGATTCCTTGTTCTACACAAAGGACCGCTTTTTGCGGTTCTATGAATTTTCAACACAGAGAGAGACACAAGTGCTTACTATTCGGAGACCTGGTTCTTTAAGCCTGAATCAAAGTCCTAAGACTCTTTCCTATAGTCCTACTGAAAATGCAATTCTTCTCTGTTCTGATGTGGATGGTGGATCTTATGAGTTGTACTGCATACCCAAAGATAGCACAATTAAGGACAGTTTTGGTAGGGGTGATATGCAAGAACCAAAGAAAGGTCTTGGAGGATCAGCAGTCTTTGTGGGTAGGAATAAGTTTGCCGTGCTTGAAAAAAGCAGCAACCAAGTACTATTTAAAAACCTGAAGAATGAGCTTGGAAAAAAAATTGTGCTTCCGATTGCCACCGATGCTATATTCTATTCTGGGGCAAACAGCTTGCTTTGTAGGTCTGAGGATAGGGTGTTTATATTTGAACATCAGCAGAGGGTCGTTGCTGGGGATCTTCAGACCCCTTTCATCAAGTATGTAGTCTGGTCTAATGACATGGAAAGTGTTGCTTTACTCAGCAAACATGCAATTGTCATTGCTAACAAGAAGCTGGTGCATCAGTGCACCCTCCATGAGACAATTCGTGTAAAGAGTGGAGCCTGGGATGACCATGGCATTTTTATTTACACAACATTAAATCATATCAAATACTGCCTCCCAAATGGAGACAGTGGGATAATAAAAACACTGGACGTCCCAATTTATATCACAAAGGTTGTTGGCAATACCATCTTCTGCTTGGGTCGGGATGGGAAAAACAAAGCTATAACCGTTGATGCTACAGAGTATATCTTTAAGCTTTCCTTGTTGAAGAAAAGATATGACCATGTTATGAACATGATAAGGAATTCACAACTTTGTGGGCAAGCTATGATTGCTTATCTACAACAGAAAGGATTTCCTGAGGTTGCCCTCCATTTTGTGAAAGATGAGAGAATTCGGTTCAATTTGGCTTTAGAGAGTGGGAACATTCAAATTGCAGTTGCATCAGCTACAGCAATTGATGAGAAAGATCACTGGTACCGATTGGGAGTTGAAGCTCTTCGACAAGGCAATGCTGGTATAGTAGAGTATGCATATCAGAGGACCAAAAATTTTGAGAGATTATCTTTCCTTTATCTCATCACTGGTAATGTTGAGAAACTTTCAAAGATGTTGAAAATTGCTGAAGTCAAGAATGATGTCATGGGCCAGTTTCACAATGCCTTATATATGGGTGATATTCGAGAGCGTGTTAAGATCTTGGAGAATGTGGGCCATTTGCCTCTTGCTTATATAACTGCATCAACCCATGGGCTACACGACATTGCTGAAAGGCTTGCAGCTGAATTGGGGGATAATGTTCCATCTTTGCCCGAGGGGAAAGTACCATCTCTCTTGATACCTCCATCACCTGTACTGTGCTGTGGTGATTGGCCCCTTCTTAGGGTCATGCGAGGCATATTTGATGGTGGGTTTAGCAACGCCGAACAAGATGCTGACGATGATGAGCTTGTGGATGCTGCAGGTGATTGGGAGGGGCTCGATGACATGGTTGATGGATTTCAAAATGGAGATGTTACTGGAATTTTGGAAGATGTAGAGGGGGCCGAAGATGGCGATGAAGAGGGTGGGTGGGAGCTGGAAGATTTAGAACTCCCCCCTGAAGCTGACACTCCAAAAGCTTCTGTCAGTACGCGGTCTTCAGTTTTTGTGGCCCCAACACCTGGGATGGCAGTTAGTCAGATATGGACTCAGAGATCATCTCTTGCTGCTGATCATGCAGCTGCTGGCAATTTTGATACTGCTATGAGATTACTCAACAGGCAGCTTGGAATAAAAAACTTTGCCCCCTTGAGATCCATGTTCCTAGATCTCCATTCTGCCAGTCACTCTTATCTGCGCGCCTTTTCATCTGCTCCAGTTGTACCCCTTGCTGTTGAAAGGGGTTGGACTGAGTCGTCTAGTCCAAATGTGAGAGGCCCACCGGCACTTCCTTTCAAATTGTCTCAATTAGATGAAAAGCTCAAAGCTGGTTATAAGTCAACAACCGCTGGGAAATTCACTGACGCTCTCCGTACATTTGTCAATATTCTCCATACAATTCCTCTGATTGTCGTTGAGTCAAGGAGGGAAGTGGATGATGTAAAGGAATTGATAATCATAGTCAAAGAGTATGTTCTTGCTCTGCAGATGGAACTGAAAAGAAGGGAAATAAAGGACAATCCAGCACGCCAACAGGAACTTGCAGCATATTTCACTCACTGCAATCTTCAGACACCTCACTTGAGGCTAGCTTTATTGAATGCAATGACTGTCTGCTACAAAGCAAAGAATCTTGCCACAGCTGCTAACTTTGCCAGGAGACTACTTGAGACCAATCCTAGCATTGAAAACCAAGCTAAGACAGCAAGGCAAGTGCTTGCAGCTGCAGAAAGGAATATGACTGATGCCACAGAGTTGAACTATGATTTCCGAAACCCATTTGTAATTTGTGGGGCAACCTATGTGCCCATTTATCGTGGACAGAAGGATGTATCTTGCCCATACTGTACTTCCCGTTTTGTACCAACCCAGGAGGGGCAGCTATGCACTGTGTGTGAACTTTCAGTGGTGGGTGCAGATGCTTCTGGATTGCTCTGTTCTCCTTCACAGATTCGTTGA 3711 0.4365 MILIGSCSERASEREKMLTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHNSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHENPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDIVVSASLDQTVRVWDIGSLKRKAGPPSDDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNDTKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDATKRTGIQTFRREHDRFWILSTHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYTKDRFLRFYEFSTQRETQVLTIRRPGSLSLNQSPKTLSYSPTENAILLCSDVDGGSYELYCIPKDSTIKDSFGRGDMQEPKKGLGGSAVFVGRNKFAVLEKSSNQVLFKNLKNELGKKIVLPIATDAIFYSGANSLLCRSEDRVFIFEHQQRVVAGDLQTPFIKYVVWSNDMESVALLSKHAIVIANKKLVHQCTLHETIRVKSGAWDDHGIFIYTTLNHIKYCLPNGDSGIIKTLDVPIYITKVVGNTIFCLGRDGKNKAITVDATEYIFKLSLLKKRYDHVMNMIRNSQLCGQAMIAYLQQKGFPEVALHFVKDERIRFNLALESGNIQIAVASATAIDEKDHWYRLGVEALRQGNAGIVEYAYQRTKNFERLSFLYLITGNVEKLSKMLKIAEVKNDVMGQFHNALYMGDIRERVKILENVGHLPLAYITASTHGLHDIAERLAAELGDNVPSLPEGKVPSLLIPPSPVLCCGDWPLLRVMRGIFDGGFSNAEQDADDDELVDAAGDWEGLDDMVDGFQNGDVTGILEDVEGAEDGDEEGGWELEDLELPPEADTPKASVSTRSSVFVAPTPGMAVSQIWTQRSSLAADHAAAGNFDTAMRLLNRQLGIKNFAPLRSMFLDLHSASHSYLRAFSSAPVVPLAVERGWTESSSPNVRGPPALPFKLSQLDEKLKAGYKSTTAGKFTDALRTFVNILHTIPLIVVESRREVDDVKELIIIVKEYVLALQMELKRREIKDNPARQQELAAYFTHCNLQTPHLRLALLNAMTVCYKAKNLATAANFARRLLETNPSIENQAKTARQVLAAAERNMTDATELNYDFRNPFVICGATYVPIYRGQKDVSCPYCTSRFVPTQEGQLCTVCELSVVGADASGLLCSPSQIR* 1237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g2362 1236 ProSiteProfiles Trp-Asp (WD) repeats profile. 105 146 IPR001680 GO:0005515
Tpr3g2362 1236 SMART WD40_4 14 53 IPR001680 GO:0005515
Tpr3g2362 1236 SMART WD40_4 98 137 IPR001680 GO:0005515
Tpr3g2362 1236 SMART WD40_4 56 95 IPR001680 GO:0005515
Tpr3g2362 1236 SMART WD40_4 253 292 IPR001680 GO:0005515
Tpr3g2362 1236 SMART WD40_4 209 248 IPR001680 GO:0005515
Tpr3g2362 1236 SMART WD40_4 140 179 IPR001680 GO:0005515
Tpr3g2362 1236 SMART WD40_4 295 333 IPR001680 GO:0005515
Tpr3g2362 1236 Pfam WD domain, G-beta repeat 214 247 IPR001680 GO:0005515
Tpr3g2362 1236 Pfam WD domain, G-beta repeat 100 137 IPR001680 GO:0005515
Tpr3g2362 1236 Pfam WD domain, G-beta repeat 142 179 IPR001680 GO:0005515
Tpr3g2362 1236 Pfam WD domain, G-beta repeat 61 95 IPR001680 GO:0005515
Tpr3g2362 1236 Pfam WD domain, G-beta repeat 257 292 IPR001680 GO:0005515
Tpr3g2362 1236 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 105 137 - -
Tpr3g2362 1236 SUPERFAMILY WD40 repeat-like 16 331 IPR036322 GO:0005515
Tpr3g2362 1236 ProSiteProfiles Trp-Asp (WD) repeats profile. 216 257 IPR001680 GO:0005515
Tpr3g2362 1236 ProSitePatterns Trp-Asp (WD) repeats signature. 166 180 IPR019775 -
Tpr3g2362 1236 ProSiteProfiles Trp-Asp (WD) repeats profile. 63 104 IPR001680 GO:0005515
Tpr3g2362 1236 PRINTS G protein beta WD-40 repeat signature 124 138 IPR020472 -
Tpr3g2362 1236 PRINTS G protein beta WD-40 repeat signature 166 180 IPR020472 -
Tpr3g2362 1236 PRINTS G protein beta WD-40 repeat signature 279 293 IPR020472 -
Tpr3g2362 1236 CDD WD40 25 333 - -
Tpr3g2362 1236 ProSiteProfiles Trp-Asp (WD) repeats profile. 260 301 IPR001680 GO:0005515
Tpr3g2362 1236 ProSiteProfiles Trp-Asp (WD) repeats profile. 147 180 IPR001680 GO:0005515
Tpr3g2362 1236 Coils Coil 1143 1170 - -
Tpr3g2362 1236 Gene3D - 660 832 - -
Tpr3g2362 1236 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 63 95 - -
Tpr3g2362 1236 Pfam Coatomer WD associated region 358 788 IPR006692 GO:0005198|GO:0006886|GO:0016192|GO:0030117
Tpr3g2362 1236 PIRSF Alpha-COP 15 1232 IPR016391 GO:0006886|GO:0006888|GO:0030126
Tpr3g2362 1236 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 147 180 - -
Tpr3g2362 1236 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 216 250 - -
Tpr3g2362 1236 Gene3D - 15 335 IPR015943 GO:0005515
Tpr3g2362 1236 SUPERFAMILY DPP6 N-terminal domain-like 339 576 - -
Tpr3g2362 1236 PANTHER COATOMER SUBUNIT ALPHA 17 1198 - -
Tpr3g2362 1236 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 260 292 - -
Tpr3g2362 1236 PANTHER COATOMER 17 1198 - -
Tpr3g2362 1236 Pfam Coatomer (COPI) alpha subunit C-terminus 835 1236 IPR010714 GO:0005198|GO:0005515|GO:0006886|GO:0016192|GO:0030126
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g2362 Tpr-Chr3 22391254 22398969 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g2362 78 335 Miscellaneous Gene Families AT5G08390 25.194 2.35e-23 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g2362 K05236 - gmx:100802600 2251.48