Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g2346 ATGTCCGCCTCCACCGATCGTTTCGCTCTTCCATGTTTTGAGGGTTTTTCTGGTAGTAGTGATGAGAAAAGAGAAAGAAGATCTTTGAAAAACAAAGCTATCAATGCATCTTCTAAGATTAAACATTCTCTTAAGAAAAAGAGTGGTAGAACAAGAAAGAGTGATGTCAGAGTTAGTTCTGTTTCAATTGAAGATATTCGTGATGTTGAAGAGCTTCAAGCTGTTGATCAGTTTCGTCAATCGTTAATCGTCGATGAATTGCTTCCTCAAAAGCATGATGATTATCATATCATGTTAAGATTTCTTAAAGCAAGAAAGTTTGATATTGAAAAAGCAAAGCATATGTGGGCTGATATGCTACAATGGAGGAAGGAATTTGGTGCTGATACCATTATGGAGGATTTTGAGTTTAATGAATTAGATGAAGTTGTAAAGTATTATCCACAAGGTAATCATGGTGTTGATAAGGAGGGGAGGCCTGTTTACATTGAAAGGCTTGGAAAAGTGGATACAAACAAACTTATGCAAGTTACAACTATGGATAGATATGTGAAGTATCACGTACGGGAGTTTGAGAAATTGTTTGCGATAAAGTTTCCGGCTTGTACAATTGCTTCCAAGAAGCATATAGATTCTAGCACGGCGATCTTAGATGTTCAAGGCGTGGGCCTTAAGAACTTTACAAAATCTGCCCGTGAACTCATATTGCGATTACAAAAGATTGACGGTGAAAATTACCCTGAGACTCTTTGCCAAATGTTTATCATAAATGCTGGCCCTGGGTTTAGGATGCTGTGGAACACTATCAAATCTTTTCTGGATCCCAAAACAACTTCAAAGATTCATGTTCTTGGAAACAAGTACCATAGCAAATTGCTTGAAGTAATCAATGCCAGCGAGTTGCCAGATTTCTTGGGAGGTACCTGCACATGTTTAGATCAGGGAGGTTGCCTCAGATCCGATAAAGGGCCCTGGAATAACCCTGAAATTATGAAGATCATTCTCAGTGGGGAAGCAAGGCGGCCAAGGCAGGTCGTAAAAGTTCTAAACAGTGAAGGAAAGGTTATTGCATATGCCAAGCCACGATGCCCAATGGTAAAAGGCAGTGATACATCCACAGCTGAATCAGGGTCTGAAGCTGAAGATATAGCTTCTCCAAAAACGGTGAAGAGTTACTCACACCTGAGGTTGACCCCTGTTCGTGAGGAAGCAAAGGTAGTTGGAAAGTCAAGCTATGCTGTTAGTGGTAACTTAGCTGGGTATCACGAATACATTCCAATGGTAGACAAAGCTGTTGATGCTGTCTTGAAGAAACAAGCATCACTCCAGAGGTCTCCTAGTACAAAAGGAACACCTCCCCTTTTTGATACTATAAAATCACCAGAAGGTATTCGAGCTCGGATTTGGGTTGCCCTGACTGTTTTCCTTTTAACCATGTTTACTCTCCTCCGTTTACTTGCATATCGTGTGACCAAGAAACTTCCTGTTGTATCTTCTAAAAATTATCATAGTACTTTAGAGCTAACTCTTGATACAACAAACAAGGAAAACTATTGTTCTTCTTCACCAACTCCAGCATATACAGAGACACAAGCCTTTTCATCCATCATGAAAAGGTTAGGTGAACTTGAAGAGAAGGTTAACACACTAAAATCTAAGCCATCTGAGTTGCCTAGACAGAAAACAGAATTACTAAATGCTGCTGTCTACCGTGTGGATGCTTTGGAAGCAGAGCTAATTGCAGCTAAAAAGGCTCTCTATGAAGCGTTAATCAGGCAAGAAGAGCTGTTTGCTTACATCAATAGTCAAGAGGAAGCTAAGTTACGGAAGTTTTGCTGGTGA 1842 0.4007 MSASTDRFALPCFEGFSGSSDEKRERRSLKNKAINASSKIKHSLKKKSGRTRKSDVRVSSVSIEDIRDVEELQAVDQFRQSLIVDELLPQKHDDYHIMLRFLKARKFDIEKAKHMWADMLQWRKEFGADTIMEDFEFNELDEVVKYYPQGNHGVDKEGRPVYIERLGKVDTNKLMQVTTMDRYVKYHVREFEKLFAIKFPACTIASKKHIDSSTAILDVQGVGLKNFTKSARELILRLQKIDGENYPETLCQMFIINAGPGFRMLWNTIKSFLDPKTTSKIHVLGNKYHSKLLEVINASELPDFLGGTCTCLDQGGCLRSDKGPWNNPEIMKIILSGEARRPRQVVKVLNSEGKVIAYAKPRCPMVKGSDTSTAESGSEAEDIASPKTVKSYSHLRLTPVREEAKVVGKSSYAVSGNLAGYHEYIPMVDKAVDAVLKKQASLQRSPSTKGTPPLFDTIKSPEGIRARIWVALTVFLLTMFTLLRLLAYRVTKKLPVVSSKNYHSTLELTLDTTNKENYCSSSPTPAYTETQAFSSIMKRLGELEEKVNTLKSKPSELPRQKTELLNAAVYRVDALEAELIAAKKALYEALIRQEELFAYINSQEEAKLRKFCW* 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g2346 613 PANTHER PHOSPHATIDYLINOSITOL/PHOSPHATIDYLCHOLINE TRANSFER PROTEIN SFH8-LIKE 16 608 - -
Tpr3g2346 613 Gene3D - 51 126 - -
Tpr3g2346 613 Pfam CRAL/TRIO domain 145 307 IPR001251 -
Tpr3g2346 613 SMART CRAL_TRIO_N_2 94 119 IPR011074 -
Tpr3g2346 613 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 16 608 - -
Tpr3g2346 613 SMART sec14_4 139 310 IPR001251 -
Tpr3g2346 613 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 139 313 IPR001251 -
Tpr3g2346 613 PRINTS Cellular retinaldehyde-binding protein signature 97 119 - -
Tpr3g2346 613 PRINTS Cellular retinaldehyde-binding protein signature 266 285 - -
Tpr3g2346 613 PRINTS Cellular retinaldehyde-binding protein signature 299 308 - -
Tpr3g2346 613 SUPERFAMILY CRAL/TRIO domain 139 333 IPR036865 -
Tpr3g2346 613 SUPERFAMILY CRAL/TRIO N-terminal domain 69 135 IPR036273 -
Tpr3g2346 613 CDD SEC14 140 308 IPR001251 -
Tpr3g2346 613 Pfam CRAL/TRIO, N-terminal domain 91 118 IPR011074 -
Tpr3g2346 613 Gene3D - 127 337 IPR036865 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g2346 Tpr-Chr3 22236262 22241618 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g2346 73 304 Acyl Lipid Metabolism Gene Families AT5G47730 27.801 2.64e-18 84.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g2346 - - gmx:100785793 946.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g2346 3 22236262 22241618 Tpr3g2346 3 22236262 22241618 ECH