Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g2290 ATGGAGGAAAAACGTCCTCCATCCGCCGTCGATGCACCGGCATCAGAACCACCACCATCTCGCCGCCGTGCCGGAGGTAACAAGAGAAAATCCGGCTCACTCAACGCCTCCAATTCCTCTTCAACTTCCTCCAAACGCATTACTCGCGAGAAAGCTTCACCTCTTCACCATCCTCCTCCTCATAACGGTCCTTTAACTAGGGCTCGTCAAATCCCTAACAATTCCTCAACCGCATCTACTTCCACCGTCGTCGGTTCCGCTTCTGCTCCCGCCGCTGTTAAACATGCTCCTCAGACACAGGCTTTGGCTGTGGCGGCGGAGCAGCTTAAGAAGGAGAACGAGTGGGAGTCTCTTGAAGCTGTAATTGAGGCTGAATTCAAAGCTATTAGATCTCGTGATGCTAACGCTCATGTTGTTCCTACTCATTGTGGTTGGTTTTCATGGATGAATATCCATTCAATTGAGAAACGTATGATGCCTTCTTTCTTTGATGAAAAAACTGAAAATCGAACTCCTGATAAATACATGAAGATACGGAATTGGATAATGAAGAAGTTTCATTCAAATCCAAACATTCAAATCGAATTGAAAGATTTATCAGAGCTTGACATTGGGGATTTGGATGCCAGGCAAGAGATAATGGAATTTCTTGACTATTGGGGTTTAATTAACTTCCACCCATTCCCTTCAACGGATTCTGCTGTGGCCAGCACCAGCGATGATGGGGAAGCAGAAAAGAAATCCTTGCTTGAAAAATTCTATCACTTTGATAGTCTCCAATTATGCCCGCCTGCTATTCAGAAGACTAGCTTAATGACTCCTGTTATGACCTCTGGCTTGTTTCCAGAGTCAGCGATTGCTGAAGAGTTGGTGAAACAAGAGGGCCCAGCAGTTGAGATGCTCGAGTACCATTGCAATTCCTGTTCTGGTGATTGTTCTCGCAAACGCTACCACTGCCAGAAGCAGGCAGATTTTGATCTATGTACGGACTGCTTCAATAATAGAAAATTTGGCTCCGGCATGTCTTCATTGGATTTTATACTCATGGAACCAGCTGAAGCTGCAGGGGTTAGTAGTGGAAAGTGGACGGATCAGGAGACACTTCTGCTCCTTGAAGCATTAGAGCTTTATAAAGAAAATTGGAATGAAATTGCAGAGCATGTTGGAACAAAATCTAAAGCTCAGTGCATATTGCACTTTGTTCAAATGCCAATTATGGATGCCTTTGTGGACTGTGATGATGATGTTGTTGCTGGTTCCAAAGAAACTGCAGATCCAGCTGCAACAAACAACAATTTGTCTATAGATGAAGACAAAGATAAAAAAGATGAAGGCAAAGATAAAAAAGATGAAGACGAAGATAAAAAAGATGAAGACAAAGATAAAAAAGATAAAGATAAAGATGCTTCAGAAATTATTGAGAACGACACTAGTGATAGCATCAAAGGCCATGATGAAACTTCTCAGGCTGAAGATGTTAAAGTGAAAGATAATCAAGAGGAAACTCCAAAGTTACCTGATGGTAGTGACGAGAAAACTAGCGAGGAAACTACTAAATTAGATGATATTAAAGCAAAATTGGGTGAGGAAGTAGGTGATGACTGTGTATTAAATGCGCTTAAGGAAGCATTTGCAGCTGTTGGTTATTCTCCTGAACCTGAAGGCCCGTCGTCATTTGCTGAAGTGGGTAATCCTGTCATGGCATTGGCAGCTTTCCTTTCACAGTTGGTGGGTTCTGATGTGGCTGTTGCTTCAGCTCATAACTACATAAAATCCTTGTCTGGAAATACTCCTGGCACTGAGATTGCTTCAAGGTGTTGCTTTCTTCTAGAAGATCCACCAGATGATAAGAAGGAAACGACTACTTCTGAGAGGGATTTTAAAAGAGAAGATCAGACTGACAAGAGTGTACAACAGGATACAGCAATGTTAGATGATAAAGATTTAGAAAACGATCCCCAGAAAACAAAAATTGCCGGTGATGCTTCAGAAGACAAGATACATCTGGCTTCTACAGATGGTGGAATCTCAGAAAAATCAATTTCTTCGAAGGGGCAGGAAATGATTAATCATGACTGTGAGCTTGACAATGGTAATGATCCCAGCATTTCAATGGCACCCAAAGATCAAGCTCAGGGTACTCTGCATAATATAGGTGGTTCAACATCCAAAGCTGAGGAGGTTCAAAAGGAAACTTCAAAAGAAGAACCTTGCCATCCTATAGAGGAACAAAAAGAAGGAAGTGTGTCTGATTCTCATCCATCAGAAAAGAATGGACTTCAACAGTCAATTAAATCCAATTTACCAGTTGAGCTGCCAAAGCCAGTAGAGACACCCAAATATGATGAAATGGCGTCTGATTCTATGCCCTCAGATAAGAGCAAGCCTCAAAAACAGTCATCTACAAATGCAGTCTCTGAGTCTCAGAAAACTACAGACTCTGCAATGGATGTTGATGTAGTTTCTAATTCCTTGCCATCAAAGATTGACTCCCAGCCACCAATATCTTCCCAAGATAATGGGACACAAAAGGATGTTGATATGGTGTCCCCTTCACAGCCAATTAGATCAAATTTGGGTGCTGAAAATGGTGCAAGTGCAGGGGAAGTTGAAGATCATGCAAGAAATGGTAAGGAAGTGAAGAATGACGGTACAAAGACTAAACAGGACAGTAGCGTTGAGAAATTGAAACGTGCAGCTGTTTCTACACTAGCGGCGGCAGCAGTGAAGGCAAAACTTCTAGCAAATCAAGAAGAAGATCAAATCCGACAACTTACTTCATTATTGATAGAAAAGCAGCTATACAAGTTGGAAGCGAAGTTGGCTTTTTTCAATGATATGGAAAATGTGGTGATGAGAGTAAAGGAGCTTTTAGAGCGGTCGCGGCATAAGCTTTATCATGAACGTGCTCTGATAATTGCCTCCCGCCTTGGTGTACCGGGAGGGTCCAGAGGTATACCACCATCCATAGTCGATAAAGCTATGAATTACACAAATTCACTCCCAAGACCACAAATCACCATGAATCCCCAAGGGCCACTGATTTCTAGACCTGTGAGCACCACAGGTACTACCCTTCCAAACCCATTAATGTCTGCAACTGCAGCAGGAAGTTCAGTTCGGCCATCCAGCCAAGAAAACCTTTCTTCTGTTGGGACAAAATAA 3165 0.425 MEEKRPPSAVDAPASEPPPSRRRAGGNKRKSGSLNASNSSSTSSKRITREKASPLHHPPPHNGPLTRARQIPNNSSTASTSTVVGSASAPAAVKHAPQTQALAVAAEQLKKENEWESLEAVIEAEFKAIRSRDANAHVVPTHCGWFSWMNIHSIEKRMMPSFFDEKTENRTPDKYMKIRNWIMKKFHSNPNIQIELKDLSELDIGDLDARQEIMEFLDYWGLINFHPFPSTDSAVASTSDDGEAEKKSLLEKFYHFDSLQLCPPAIQKTSLMTPVMTSGLFPESAIAEELVKQEGPAVEMLEYHCNSCSGDCSRKRYHCQKQADFDLCTDCFNNRKFGSGMSSLDFILMEPAEAAGVSSGKWTDQETLLLLEALELYKENWNEIAEHVGTKSKAQCILHFVQMPIMDAFVDCDDDVVAGSKETADPAATNNNLSIDEDKDKKDEGKDKKDEDEDKKDEDKDKKDKDKDASEIIENDTSDSIKGHDETSQAEDVKVKDNQEETPKLPDGSDEKTSEETTKLDDIKAKLGEEVGDDCVLNALKEAFAAVGYSPEPEGPSSFAEVGNPVMALAAFLSQLVGSDVAVASAHNYIKSLSGNTPGTEIASRCCFLLEDPPDDKKETTTSERDFKREDQTDKSVQQDTAMLDDKDLENDPQKTKIAGDASEDKIHLASTDGGISEKSISSKGQEMINHDCELDNGNDPSISMAPKDQAQGTLHNIGGSTSKAEEVQKETSKEEPCHPIEEQKEGSVSDSHPSEKNGLQQSIKSNLPVELPKPVETPKYDEMASDSMPSDKSKPQKQSSTNAVSESQKTTDSAMDVDVVSNSLPSKIDSQPPISSQDNGTQKDVDMVSPSQPIRSNLGAENGASAGEVEDHARNGKEVKNDGTKTKQDSSVEKLKRAAVSTLAAAAVKAKLLANQEEDQIRQLTSLLIEKQLYKLEAKLAFFNDMENVVMRVKELLERSRHKLYHERALIIASRLGVPGGSRGIPPSIVDKAMNYTNSLPRPQITMNPQGPLISRPVSTTGTTLPNPLMSATAAGSSVRPSSQENLSSVGTK* 1055
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g2290 1054 SUPERFAMILY RING/U-box 295 352 - -
Tpr3g2290 1054 Pfam SWIRM-associated region 1 903 979 IPR032451 -
Tpr3g2290 1054 ProSitePatterns Zinc finger ZZ-type signature. 305 331 IPR000433 GO:0008270
Tpr3g2290 1054 MobiDBLite consensus disorder prediction 753 768 - -
Tpr3g2290 1054 MobiDBLite consensus disorder prediction 30 48 - -
Tpr3g2290 1054 SMART zz_5 299 343 IPR000433 GO:0008270
Tpr3g2290 1054 Gene3D - 357 408 - -
Tpr3g2290 1054 MobiDBLite consensus disorder prediction 703 726 - -
Tpr3g2290 1054 Gene3D - 297 346 IPR043145 -
Tpr3g2290 1054 ProSiteProfiles SWIRM domain profile. 137 234 IPR007526 GO:0005515
Tpr3g2290 1054 ProSiteProfiles Zinc finger ZZ-type profile. 300 354 IPR000433 GO:0008270
Tpr3g2290 1054 MobiDBLite consensus disorder prediction 1 90 - -
Tpr3g2290 1054 PANTHER SWI/SNF COMPLEX SUBUNIT SWI3D 38 1018 - -
Tpr3g2290 1054 Gene3D - 143 228 IPR036388 -
Tpr3g2290 1054 MobiDBLite consensus disorder prediction 423 518 - -
Tpr3g2290 1054 MobiDBLite consensus disorder prediction 614 672 - -
Tpr3g2290 1054 CDD SANT 378 403 IPR001005 -
Tpr3g2290 1054 MobiDBLite consensus disorder prediction 434 518 - -
Tpr3g2290 1054 SUPERFAMILY Homeodomain-like 357 405 IPR009057 -
Tpr3g2290 1054 PANTHER SWI/SNF COMPLEX-RELATED 38 1018 - -
Tpr3g2290 1054 MobiDBLite consensus disorder prediction 614 893 - -
Tpr3g2290 1054 MobiDBLite consensus disorder prediction 67 87 - -
Tpr3g2290 1054 MobiDBLite consensus disorder prediction 1033 1054 - -
Tpr3g2290 1054 MobiDBLite consensus disorder prediction 727 752 - -
Tpr3g2290 1054 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 360 396 IPR017930 -
Tpr3g2290 1054 ProSiteProfiles SANT domain profile. 357 408 IPR017884 -
Tpr3g2290 1054 SMART sant 358 406 IPR001005 -
Tpr3g2290 1054 SUPERFAMILY Homeodomain-like 144 226 IPR009057 -
Tpr3g2290 1054 CDD ZZ_RSC8 303 347 IPR041984 -
Tpr3g2290 1054 Pfam Myb-like DNA-binding domain 360 402 IPR001005 -
Tpr3g2290 1054 ProSiteProfiles Myb-like domain profile. 354 404 IPR001005 -
Tpr3g2290 1054 MobiDBLite consensus disorder prediction 790 860 - -
Tpr3g2290 1054 Pfam Zinc finger, ZZ type 302 337 IPR000433 GO:0008270
Tpr3g2290 1054 MobiDBLite consensus disorder prediction 868 893 - -
Tpr3g2290 1054 Pfam SWIRM domain 140 225 IPR007526 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g2290 Tpr-Chr3 21587693 21595744 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g2290 303 400 EF-hand Containing Proteins AT3G07740 37.383 1.20e-12 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g2290 K11649 - gmx:100799723 1308.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g2290 3 21587693 21595744 Tpr3g2290 3 21587693 21595744 ECH