Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g2278 ATGGAGGCGTACAAGAAAGTTATGATTGTGGTTATGTTATTGGCCTTTGCCAATGTCACGATGTTGGTTAATGGTCAGACATTTTGTCGCACAACAAAAGCTGGCCGCGACGCATGCAAACCGTATGTAAATGGAGATAACTCTGTTGATAATCAAAATCCAAGTTCTGCTTGCTGCTCTGCTATTGCTAAGGCTGATCTTCCATGTCTCTGTCAATACAAGAATTATCTTCCCTTATATGGTATTGATCCAGAACAAGTCATGCAACTTCCGGTTAATTGTAAGCTTACTAACTCCTTCCACTGCTAG 309 0.411 MEAYKKVMIVVMLLAFANVTMLVNGQTFCRTTKAGRDACKPYVNGDNSVDNQNPSSACCSAIAKADLPCLCQYKNYLPLYGIDPEQVMQLPVNCKLTNSFHC* 103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g2278 102 SMART aai_6 29 102 IPR016140 -
Tpr3g2278 102 CDD nsLTP_like 29 102 IPR044741 -
Tpr3g2278 102 Gene3D - 26 102 IPR036312 -
Tpr3g2278 102 PANTHER LIPID TRANSFER PROTEIN 6 102 - -
Tpr3g2278 102 PANTHER LIPID BINDING PROTEIN-RELATED 6 102 IPR039265 GO:0005504|GO:0009627
Tpr3g2278 102 Pfam Probable lipid transfer 23 101 IPR016140 -
Tpr3g2278 102 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 29 101 IPR036312 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g2278 Tpr-Chr3 21411127 21411794 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g2278 5 102 Acyl Lipid Metabolism Gene Families AT5G48490 36.634 9.17e-14 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g2278 - - aprc:113865173 112.464