Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g2270 ATGATGTCTTTGAGAAATCCTATGATGAAAAACTACTCAAATCAATGTCTTCTCAAAACCCATTTTCTCAAAGTTCCAACCTTTCATCCCTTCTTCAAATTCAACACATACCCATATGCTTCAAACAGAACTCAAACCCTCTCATTCACCATCAACTGTAACCTCAAAAACAAAGGGAAGAACTTGTTGTCTCAGAAGATTGTCTTATCAGAAGCTTCTCCTCCACCACTCACACAGGATAATGATGACATCATCAATGGTGGGAATGTTCCAGTGAGTTCAAAGAATAAGAAAGGACTTTATGGTGTGGTTAATAAGTTGACCAAAAAGGTGTTGCAGATTCTCTCTAATTTGCCTTTGGCTATTGGAGAAATGTTCACCATTGCTTTTTTAATGGGGTTGGGCACTTTTATTGATCAAGGTCAGAAACCTGAGTTTTACTTCCAGAACTACCCTGAAGATCATCCTGTTTTAGGATTTTTTACTTGGAGATGGATTTTCTTCCTTGGTTTTGATCACATGTATTCAGCCCCTATATTTCTTGGAATGTTGGCTCTTCTCGGCGCATCCCTTATTGCCTGCACTTACACAACACAGCTCCCACTCATCAAGGTTTCTAAAAGATGGTCGTTTATGCACTCTTCCGAGGCTATACGTAAGCAGGAGTTTTCAGAATCATTGCCACGAGCATCAATCCAAGATGTTGGTACTATATTAATGGGAGCTGGATATGAGGTATTCTTGAAAGGACCAACTTTGTATGCTTTTCGTGGACTTGCTGGTCGGTTAGCCCCTGTTGGAGTTCATATAGCACTTTTGTTGATAATGGGTGGAGGAACATTAAGTGCTGCAGGGAGCTTTAGAGGTTCAGTCACTGTACCACAGGGACTCAATTTTGTTGTCGGAGATGTTCTCGGCCCTACTGGCTTTCTTTCCATTCCAACGGATGCCTTTAATACAGAAATTCATGTCAACAGATTCTCTATGGACTATTATGAAAGTGGAGAGGTTTCACAGTTCCGCACCGATCTTTCCCTCTTGAACATGGATGGGAAAGAAGTAATGAGGAAAACAATTAGTGTAAATGATCCTTTAAGATATGGTGGTATCACCATATACCAGACAGATTGGAGTATTTCAGCTCTGCAAATTCTCAAGGACAATGAAGGACCTTATAACTTGGCTATGGCACCTCTAAAGATCAATGGAGATAAGAAACTTTATGGCACTTTTCTACCTGTTGGAGATATTAACTCTCCTGATGTTAAGGGAATATCTATGCTTGCTCGTGACCTGCAGTCAATTGTCCTATATGATAAGGAAGGGAAATTCGCAGGAGTTAGGCGACCAAATTCAAAGCTTCCAATCAACATTGATGGCTCAGAAATTGTCGTTGTTGATGCAATAGGGAGTAGTGGCTTGGACTTGAAGACTGACCCTGGCGTGCCAGTTGTATATGCTGGATTTGGTGCTCTAATGCTTACTACTTGCATCAGCTATTTATCTCATTCACAGATATGGGCCTTACAAGATGGAACGACAGTCGTCATTGGAGGGAAGACTAACAGAGCAAAGTTAGAGTTTCCGGACGAGATGAACCTCTTGCTTGACAAAATCCCTGAAATAGTTGAATCATCATCTCTATCTAAGAAAACTGATAGCATGGTTAGTTAG 1674 0.4074 MMSLRNPMMKNYSNQCLLKTHFLKVPTFHPFFKFNTYPYASNRTQTLSFTINCNLKNKGKNLLSQKIVLSEASPPPLTQDNDDIINGGNVPVSSKNKKGLYGVVNKLTKKVLQILSNLPLAIGEMFTIAFLMGLGTFIDQGQKPEFYFQNYPEDHPVLGFFTWRWIFFLGFDHMYSAPIFLGMLALLGASLIACTYTTQLPLIKVSKRWSFMHSSEAIRKQEFSESLPRASIQDVGTILMGAGYEVFLKGPTLYAFRGLAGRLAPVGVHIALLLIMGGGTLSAAGSFRGSVTVPQGLNFVVGDVLGPTGFLSIPTDAFNTEIHVNRFSMDYYESGEVSQFRTDLSLLNMDGKEVMRKTISVNDPLRYGGITIYQTDWSISALQILKDNEGPYNLAMAPLKINGDKKLYGTFLPVGDINSPDVKGISMLARDLQSIVLYDKEGKFAGVRRPNSKLPINIDGSEIVVVDAIGSSGLDLKTDPGVPVVYAGFGALMLTTCISYLSHSQIWALQDGTTVVIGGKTNRAKLEFPDEMNLLLDKIPEIVESSSLSKKTDSMVS* 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g2270 557 Hamap Cytochrome c biogenesis protein Ccs1 [ccs1]. 108 537 IPR023494 -
Tpr3g2270 557 Pfam ResB-like family 421 532 IPR007816 -
Tpr3g2270 557 Pfam ResB-like family 120 384 IPR007816 -
Tpr3g2270 557 PANTHER CYTOCHROME C BIOGENESIS PROTEIN CCS1, CHLOROPLASTIC 73 546 IPR023494 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g2270 21 557 Miscellaneous Gene Families AT1G49380 68.498 0.0 760
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g2270 K07399 - gmx:100807003 899.427
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g2270 3 21344061 21347835 Tpr3g2270 3 21344061 21347835 ECH