Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g2269 ATGGCTTTCACTTCGCATCTTTGCCGTATCCCCGTCACTCGCATCGACGCTCCTTCACCGGAAAAAATCCGCTACCGGAAACTCTTCTCTGTCCGTTGTTCCTCTGACTCCAATTTCGATCCAAAGGTTTTCAGGAAAAACCTCACAAGAAGTGAGAATTATAACCGTAAAGGCTTTGGTCACAAAGAAGAAACTCTCAAACTCATGAATCGCGAGTACACAAGTGATATTATTAAGACTTTGAAGGACAATGGGTATGAGTATACATGGGGTAATGTTACTGTGATGCTAGCTGAAGCCTTTGGCTTTTGTTGGGGGGTTGAGAGGGCTGTTCAAATTGCTTATGAGGCCAGAAAACAGTTTCCTGATGACAAAATTTGGATTACCAATGAAATCATCCACAACCCAACTGTTAATAAGCGGCTAGAAGAGATGGAAGTGCAGAACATTCCTATTGGAGAAGGAAAGAAACAATTTGAGGTTGTTAACAAGGGCGATGTAGTCATATTGCCTGCTTTTGGAGCTGCAGTGGATGAGATGTTGACTTTGAGTGAGAAAAATGTTCAAATCGTTGATACAACTTGTCCATGGGTTTCAAAGGTATGGAATGTTGTCGAAAAGCACAAAAAAGGAGATTATACCTCGATAATTCATGGTAAATATGCACACGAGGAAACTGTAGCAACTGCATCTTTTGCTGGAAAGTACATAATTGTGAAAAATATGGCAGAGGCTGAATATGTGTGCGACTATATTCTTGGAGGTGAATTTAATGGATCCAGCTCAACCAGAGAGGCATTTTTCGAGGTACGACTTTTGTCCTGTCTTGTAAACAATCTTGCTTCCAAAACCCTTCAATGTCGTGATTATTTTATTTTTCTTGTACAGAAATTTAAATTTGCCCTTTCCAAGGGCTTTGATCCAGACAGTGACCTGATAAAACTTGGCATTGCAAATCAGACAACAATGCTCAAGGGAGAGACTGAAGAGATTGGGAAACTAGTGGAGAGGACAATGATGCGCAAATATGGTGTGGAAAACGCTACTGAGCACTTTATAAGCTTCAACACAATTTGTGATGCTACTCAGGAGCGACAAGATGCTATTTACAAGCTGGTGGAGAAAGATATGGATCTTATGTTAGTTGTTGGTGGCTGGAACTCGAGTAATACATCGCATCTTCAAGAGATAGCTGAGGAACGCGGAATTCCTTCTTACTGGATTGATAGTGAGCAAAGAATTGGTCCAGGAAACAGAATAGCACACAAATTGAATCATGGCGAACTCGTGGAGAAAGAAAACTTTCTACCAAAGGGTCCATTAAGGATTGGTGTAACATCTGGTGCATCTACACCAGACAAGGTCGTGGAAGACGCACTTATCAAGGTGTTTGACTTGAAAAGGGAAGAAGCATTACAACTCGTGTAA 1428 0.4118 MAFTSHLCRIPVTRIDAPSPEKIRYRKLFSVRCSSDSNFDPKVFRKNLTRSENYNRKGFGHKEETLKLMNREYTSDIIKTLKDNGYEYTWGNVTVMLAEAFGFCWGVERAVQIAYEARKQFPDDKIWITNEIIHNPTVNKRLEEMEVQNIPIGEGKKQFEVVNKGDVVILPAFGAAVDEMLTLSEKNVQIVDTTCPWVSKVWNVVEKHKKGDYTSIIHGKYAHEETVATASFAGKYIIVKNMAEAEYVCDYILGGEFNGSSSTREAFFEVRLLSCLVNNLASKTLQCRDYFIFLVQKFKFALSKGFDPDSDLIKLGIANQTTMLKGETEEIGKLVERTMMRKYGVENATEHFISFNTICDATQERQDAIYKLVEKDMDLMLVVGGWNSSNTSHLQEIAEERGIPSYWIDSEQRIGPGNRIAHKLNHGELVEKENFLPKGPLRIGVTSGASTPDKVVEDALIKVFDLKREEALQLV* 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g2269 475 CDD lytB_ispH 95 460 IPR003451 GO:0019288|GO:0046872|GO:0050992|GO:0051745
Tpr3g2269 475 Gene3D - 195 355 - -
Tpr3g2269 475 Gene3D - 104 194 - -
Tpr3g2269 475 PANTHER 4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE, CHLOROPLASTIC 31 269 - -
Tpr3g2269 475 PANTHER 4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE, CHLOROPLASTIC 295 473 - -
Tpr3g2269 475 TIGRFAM ispH_lytB: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 95 460 IPR003451 GO:0019288|GO:0046872|GO:0050992|GO:0051745
Tpr3g2269 475 Hamap 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [ispH]. 93 467 IPR003451 GO:0019288|GO:0046872|GO:0050992|GO:0051745
Tpr3g2269 475 Pfam LytB protein 95 460 IPR003451 GO:0019288|GO:0046872|GO:0050992|GO:0051745
Tpr3g2269 475 Gene3D - 356 474 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g2269 Tpr-Chr3 21338552 21342661 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g2269 K03527 - gmx:100818067 774.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g2269 3 21338552 21342661 Tpr3g2269 3 21338552 21342661 ECH