Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g2259 ATGAGGTCTCGAATAGTGAGAGATGCAGTTGTATACCGTGACCATGTCCAAGCAATAAAATCTGGTTTTGCATCAACTATTTTCACTTGTAATCAACTCATTCACATTTATTCTAACCATGGTCTTTTTCAAGATGCCCACAAACTGTTCGACGAAATTTCCCACCCAAATGTGTTCTCTTGGAATGCCCTTATTAGGGCATACATCAAAGCACACAACTTGAGACAAGCACGAGCTGTTTTCGACTCTGCCTCTAATAAAGATTTGGTTTCTTATAATTCCATGTTGTCGGCTTATGTTGGTGCTGACGGATATGAAACTGAGGCACTCGATTTGTTTGCTAGAATGCAATCTGAACGTGACACAAAAGGGATTGACGAGTTCACTCTTACAACCATGCTTAACTTTACTGCCAAGTTACGTGTAGTGTGTTATGGGAAGCAGATGCATTCATATATGGTGAAAACTGCAAGTGATTTAAGCAAGTTTGCATCGAGTTCTCTTATTAACATGTACTCTAAATGTGGTTTGTTTCGTGAAGCGTGCAATGTGCTTAGTGGTTGTGATGGGGTGGTGGACTTGGTTTCAAAGAATGCAATGGTTGCTGCTTGTTGTAGGGAAGGAGAGATGGACATGGCTTTAAATGTCTTTTGGAAAAATTCTGAATTGAATGATACTGTGTCTTGGAATACATTGATTGCAGGATATGCTCAGAATGGCTATATGGATAAAGCACTTGCCTTGTTTGTTGAGATGACTGAAAGAGGTATTAGGCATGATGAACATACTTTAGCAAGTGTTTTAAGTGCCTGCTCTAACCTAAAATGTTTGAAACTTGGCAAGTGTATCCATGCGTGGGTGTTGAAAAATGACTTCAGTTCAAATCAATTCATTAGCAGCGGCATCGTAGACTTATACTGTAAGTGTGGGAATATTAGGTATGCGGAGTCAGTATATGAAGGAATTGGCATTAAAAGCCAATTTGAAGTTGCTTCATTGATTGTAGGCTATTCATCTCAAGGCGACATGACGAAAGCCCAAAGGCTTTTTGATACTCTATCCGAAAGAAATTATGTTGTCTGGACAGCTCTATGTTCCGGCTATGCCAAATTGCAACAATGTGAGGAAGTCTTTAAACTTTTCAGAGAGTTTATAATTACAGAAGCACTAATTCCTGATGCAATGATCATCATCAGTGTGCTTGGTGCATGTGCAACGCAAGCCATCCTTTGTTTAGGAAAGCAAATTCATACGTACATCTTGAAAATGAGACTTAATATGGATAAAAAATTGCTGAGTGCTATGGTTGACATGTACTCAAAATGTGGTAATATCATGTATGCCGAGAAAAGCTACCAACTAATGACTGATAAGGATAGAGATGCAATCTTATACAATGTCATGATAGCTGGTTATGCTCATCATGGTTTTGAAAATAAAGCTATTCAGCTTTTTCAGGACATGTTGAAGAAAAGAGTCAAGCCAGATGCAGTCACTTTTGTAGCACTTCTATCTGCTTGTCGGCACCGTGGACTAGTAGAACAAGGAGAGAAATTTTTTATTTCAATGAAAGAAGATTACAATGTACTACCCGAGGTATACCACTATGCCTGTATGGTTGATATGTATGGAAGGGCCAATCAAGTAGAAAAGGCACTAGAATTCATGAGGAAGATTCCCATACAGATAGATGCTACAATTTGGGGAGCATTTGTTAATGCTTGTCAGATAAACAAAAATACATCACTTGTCAACAAAGCAGAAGAGGAACTATTAAAAATTGGGGCAGATAATGGGTCTCGGTTTGTGCAATTGGCCAATATCTATGCTGCTGAGGGGAAATGGGATGAGATGGGAAGAATAAGGAAGAAAATGAGAGTGAAGGAGGCAAAAAAGCTTGTTGGTTGCAGTTGGATATATGTGGATAATGGTACTCATGCATTTACTTCTGGGGATACATCTCATGCAAAAGCAGATGCAATATATTCAACTTTGATGTGCTTGAATGGGAAAGAACTGAAGCAACTTCATGAAATTGGGGGTGATGTTTTTGTAGACATATTTTGA 2067 0.387 MRSRIVRDAVVYRDHVQAIKSGFASTIFTCNQLIHIYSNHGLFQDAHKLFDEISHPNVFSWNALIRAYIKAHNLRQARAVFDSASNKDLVSYNSMLSAYVGADGYETEALDLFARMQSERDTKGIDEFTLTTMLNFTAKLRVVCYGKQMHSYMVKTASDLSKFASSSLINMYSKCGLFREACNVLSGCDGVVDLVSKNAMVAACCREGEMDMALNVFWKNSELNDTVSWNTLIAGYAQNGYMDKALALFVEMTERGIRHDEHTLASVLSACSNLKCLKLGKCIHAWVLKNDFSSNQFISSGIVDLYCKCGNIRYAESVYEGIGIKSQFEVASLIVGYSSQGDMTKAQRLFDTLSERNYVVWTALCSGYAKLQQCEEVFKLFREFIITEALIPDAMIIISVLGACATQAILCLGKQIHTYILKMRLNMDKKLLSAMVDMYSKCGNIMYAEKSYQLMTDKDRDAILYNVMIAGYAHHGFENKAIQLFQDMLKKRVKPDAVTFVALLSACRHRGLVEQGEKFFISMKEDYNVLPEVYHYACMVDMYGRANQVEKALEFMRKIPIQIDATIWGAFVNACQINKNTSLVNKAEEELLKIGADNGSRFVQLANIYAAEGKWDEMGRIRKKMRVKEAKKLVGCSWIYVDNGTHAFTSGDTSHAKADAIYSTLMCLNGKELKQLHEIGGDVFVDIF* 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g2259 688 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 225 259 IPR002885 -
Tpr3g2259 688 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 461 495 IPR002885 -
Tpr3g2259 688 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 57 91 IPR002885 -
Tpr3g2259 688 Gene3D Tetratricopeptide repeat domain 278 411 IPR011990 GO:0005515
Tpr3g2259 688 Gene3D Tetratricopeptide repeat domain 512 636 IPR011990 GO:0005515
Tpr3g2259 688 Gene3D Tetratricopeptide repeat domain 412 511 IPR011990 GO:0005515
Tpr3g2259 688 Gene3D Tetratricopeptide repeat domain 143 277 IPR011990 GO:0005515
Tpr3g2259 688 Gene3D Tetratricopeptide repeat domain 16 142 IPR011990 GO:0005515
Tpr3g2259 688 Pfam Pentatricopeptide repeat domain 56 101 IPR002885 -
Tpr3g2259 688 Pfam PPR repeat family 225 272 IPR002885 -
Tpr3g2259 688 Pfam PPR repeat family 461 507 IPR002885 -
Tpr3g2259 688 PANTHER - 15 218 - -
Tpr3g2259 688 PANTHER - 194 352 - -
Tpr3g2259 688 PANTHER - 331 672 - -
Tpr3g2259 688 Pfam E motif 581 639 IPR046848 -
Tpr3g2259 688 Pfam PPR repeat 196 217 IPR002885 -
Tpr3g2259 688 Pfam PPR repeat 166 185 IPR002885 -
Tpr3g2259 688 Pfam PPR repeat 332 357 IPR002885 -
Tpr3g2259 688 Pfam PPR repeat 535 558 IPR002885 -
Tpr3g2259 688 Pfam PPR repeat 359 383 IPR002885 -
Tpr3g2259 688 Pfam PPR repeat 28 53 IPR002885 -
Tpr3g2259 688 PANTHER - 194 352 - -
Tpr3g2259 688 PANTHER - 15 218 - -
Tpr3g2259 688 PANTHER - 331 672 - -
Tpr3g2259 688 TIGRFAM PPR: pentatricopeptide repeat domain 28 53 IPR002885 -
Tpr3g2259 688 TIGRFAM PPR: pentatricopeptide repeat domain 464 497 IPR002885 -
Tpr3g2259 688 TIGRFAM PPR: pentatricopeptide repeat domain 227 260 IPR002885 -
Tpr3g2259 688 TIGRFAM PPR: pentatricopeptide repeat domain 59 89 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g2259 Tpr-Chr3 21258041 21261487 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g2259 63 665 Glycoside Hydrolase AT3G49170 31.743 4.85e-95 311
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g2259 - - gmx:100803987 1094.34