Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tpr3g2251 | ATGATGAATCAAATTCAACTACCCAAACTCCTCCTACACCAACATCTCAAACCCAACCATAAACCCTTAACCCTCTTCTTCTTCTTCTTCTCTTCTTCTTCTTCTTCTTCTTCTTCCTCAGAGCAACAACAAAATACAGTAACAAAAGCAGTTTCAATTCTCACAAATCAACGTTCAAAATCTCGCTGGAACACTCTCCATTCTCTCTTCCCAACCACCATCAACCCCATCGATTTCTCCCAAATCACACTCCACCTCAAAAACAAACCCCATCTCGCACTTCATTTCTTTCAATGGACCAAATCCAAGTCCCTATGTCACCACAATCTCGCTTCTTATTCCACCATCATCCACATCCTCGCACGTGGCCGACTCTACTCACACGCTTACAGCACCATCAGAACCGCCCTTAATCAAAACGACGATGAACACTGTCGTTTTGAGCCTTCCTCCACGCCGTTGAAGCTTTTTGAGATTCTTGTTAATTCTTATCGAGAGTGTGGTTCTGCTCCTTTTGTTTTTGATTTGTTGATTGAAGCCTGTTTACAATCTAGAAAAATTGAAGCTTCGGTTGAAATTAGTAGAATGTTACTCTCACGTGGGACTAATCCTAAAGTTATGACATTGAATTCTTTGATTTCTAGGGTTTGTAGAAAATTTGGGGTGGATTTAGGGTATGAGATTTATAGGGAGTTTTTTAGGTTAGATGAAGAAAAATGTGAAATTTTGAAAAGGGGTTCTGGTTTTAGAGTTGTTAACCCTAATGTGCATACTTTTAATACATTGATGTTGTGTTGTTATCAAAATGGTTTGGTGGATAGGGTTGAGGAAATTTGGAGTGAAATGTGTGAAATGAATTGTAATCCTAATGCTTATAGCTATAGTTTATTGATGTCTGCATTTTGTGAGAGAGATAGGTTGGAAGATTGTGAGAAGTTGTGGGAAGAAATGAGGAAGAAGGAAATTGAGCCTGATGTGGTTAGTTATAATACTATGATCGGTGGGTTTTGTAAGATTAGTGATGTTGGAAGAGCTGAGGAATTTTTCAGAGAAATGGGATTGGTTGGTATTGATGCAACTGTTTCAACTTATGAGCATCTTGTTAAGGGGTATTGTAATATTGAGGATGTTGATTCTGCTGTTCTTGTTTATAAGGATATGATAAGGAAGGATTTCAGGCCTGATGTTTTAACACTTGATATGGTGGTTAGGTTACTTTGTGATAAGGGTAGGGTTGAGGAAGCTATAGAGTTTTTCAGGAGTGGAGTTGGTAAGTTTGATTTAGTTCCAAAGGAAAAGAGTTATGTGGCTTTGATTAAAGGGTTGTGTGTTGAGGGAAGGATGGATGAGGGGTTGAAGCTTCAGGCAGAGATGGTAGGAAAAGGGTTTGAACCGAATTCGGAAATATATGAAGCTTTTATTGATGGGTATATTAGACAAGGGAATCATGAAAAGGCTGAGGCTTTGAGGAAAGAAATGCTGCAAACTCCGAGCACAGCGACAACAGAACAATAA | 1515 | 0.3888 | MMNQIQLPKLLLHQHLKPNHKPLTLFFFFFSSSSSSSSSSEQQQNTVTKAVSILTNQRSKSRWNTLHSLFPTTINPIDFSQITLHLKNKPHLALHFFQWTKSKSLCHHNLASYSTIIHILARGRLYSHAYSTIRTALNQNDDEHCRFEPSSTPLKLFEILVNSYRECGSAPFVFDLLIEACLQSRKIEASVEISRMLLSRGTNPKVMTLNSLISRVCRKFGVDLGYEIYREFFRLDEEKCEILKRGSGFRVVNPNVHTFNTLMLCCYQNGLVDRVEEIWSEMCEMNCNPNAYSYSLLMSAFCERDRLEDCEKLWEEMRKKEIEPDVVSYNTMIGGFCKISDVGRAEEFFREMGLVGIDATVSTYEHLVKGYCNIEDVDSAVLVYKDMIRKDFRPDVLTLDMVVRLLCDKGRVEEAIEFFRSGVGKFDLVPKEKSYVALIKGLCVEGRMDEGLKLQAEMVGKGFEPNSEIYEAFIDGYIRQGNHEKAEALRKEMLQTPSTATTEQ* | 505 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tpr3g2251 | 504 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 255 | 289 | IPR002885 | - | |
| Tpr3g2251 | 504 | Gene3D | Tetratricopeptide repeat domain | 240 | 387 | IPR011990 | GO:0005515 | |
| Tpr3g2251 | 504 | Gene3D | Tetratricopeptide repeat domain | 33 | 236 | IPR011990 | GO:0005515 | |
| Tpr3g2251 | 504 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 325 | 359 | IPR002885 | - | |
| Tpr3g2251 | 504 | PANTHER | TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED | 10 | 497 | - | - | |
| Tpr3g2251 | 504 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 360 | 394 | IPR002885 | - | |
| Tpr3g2251 | 504 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 431 | 465 | IPR002885 | - | |
| Tpr3g2251 | 504 | TIGRFAM | PPR: pentatricopeptide repeat domain | 363 | 396 | IPR002885 | - | |
| Tpr3g2251 | 504 | TIGRFAM | PPR: pentatricopeptide repeat domain | 257 | 291 | IPR002885 | - | |
| Tpr3g2251 | 504 | TIGRFAM | PPR: pentatricopeptide repeat domain | 327 | 352 | IPR002885 | - | |
| Tpr3g2251 | 504 | TIGRFAM | PPR: pentatricopeptide repeat domain | 292 | 326 | IPR002885 | - | |
| Tpr3g2251 | 504 | TIGRFAM | PPR: pentatricopeptide repeat domain | 469 | 494 | IPR002885 | - | |
| Tpr3g2251 | 504 | TIGRFAM | PPR: pentatricopeptide repeat domain | 434 | 467 | IPR002885 | - | |
| Tpr3g2251 | 504 | Pfam | PPR repeat family | 297 | 338 | IPR002885 | - | |
| Tpr3g2251 | 504 | Pfam | PPR repeat family | 360 | 407 | IPR002885 | - | |
| Tpr3g2251 | 504 | PANTHER | PPR CONTAINING PLANT-LIKE PROTEIN | 10 | 497 | - | - | |
| Tpr3g2251 | 504 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 466 | 500 | IPR002885 | - | |
| Tpr3g2251 | 504 | Gene3D | Tetratricopeptide repeat domain | 401 | 502 | IPR011990 | GO:0005515 | |
| Tpr3g2251 | 504 | Pfam | PPR repeat | 258 | 287 | IPR002885 | - | |
| Tpr3g2251 | 504 | Pfam | PPR repeat | 470 | 494 | IPR002885 | - | |
| Tpr3g2251 | 504 | Pfam | PPR repeat | 434 | 463 | IPR002885 | - | |
| Tpr3g2251 | 504 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 395 | 430 | IPR002885 | - | |
| Tpr3g2251 | 504 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 290 | 324 | IPR002885 | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Tpr3g2251 | 109 | 503 | Glycosyltransferase | AT1G05670 | 23.974 | 2.05e-31 | 126 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tpr3g2251 | - | - | mtr:MTR_0026s0200 | 729.169 |