Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g2246 ATGGTGGATGTATACACTGTCAAGGTGGAAGAAGCAAGATCTGCAACTCATGAAAAACCATCAGCAGGTCCTGTGTATAGATGCATCTATGCTAAAGATGGTTTATTGGAGTTACCTTCTCATTTTCAATCTCCATGGGACTTTCTCAGGGATTCTGCTGCGAGGAGCCCCAGCAAACCAATGTTGGGACGGCGTCACAAAACAGATTCTACTAAGGCTGGTCCCTATGAATGGCTCACATATGAGGAGGCTTATAATGCTGCCATCCAAATTGGTTCTTCCATGAGGACCCGTGGTGTCAATCCTGGAGACCGTTGTGGCATATATGGATCCAATTGTCCTGAATGGATAATTGCAATGGAGGCTTGTAACAGCTATGCAGTAACATATGTTCCCTTATATGACACCCTTGGTCCTAATGCTGTAGAATTTATCATAAACCATGCCGAAGTTTCGATAGCATTTGTACAACAAAGCAAAATTCCTTCTATTTTGTCATGTCTTGGTCGGTGTGCAAGTCTTAAAACTATTGTGAGTTTCGGTAATGTTTCAACCGCACAAAAGAAAGAAGCCGAGGAACTTGGTGTATCCTGCTTCTCATGGGGAGAGTTTCTCCAGCTGGGAAATTTGGATTTGGATTTACCATTAAAAAACAAGACTAGCATCTGCACAATCATGTACACAAGTGGAACAACAGGTGAACCAAAAGGTGTCATTATTAAGAATGAGGCTTTCATGACTGAAGTATTGTCCATTGACCAAATACTTTCTCTAACAGACAAAGCGGCAACCGAAGACGATGTGTACTTCTCGTTTCTTCCTCTTGCTCATGTATATGACCAGATAATGGTGACCTATAGCCTCTACAAGGGCTCCTCAATTGGATTTTGGCAAGGCGATATCAGATTCTTAATGGAAGATATTCAGACACTGCAACCAACTATATTTTGTGGTGTTCCTCGAATTTATGACCGTGTTTATGCTGGTATCAACAGCAAAATTTCATCGGAAGGATCATGGAAAAAGACACTGTTTCAGTATGCATATAACTACAAATTGGGTTATCTAAATAGTGGTCTTCCACAAGACAAAGCAGCGCCTTGGATTCATAAGCTTGTGTTTGACAAGATAAAACATGCATTGGGTGGACGAGTTCGACTCATGTTATCAGGAGCTGCTCCTTTGTCTATGAACGTGGAGGAGTTTCTGAGGGTCACTTTCGGAGCTACGCTGGCACAAGGATATGGTCTCACCGAAAGTTGTGCGGGCTGTTTCAGTGCAATAACCAATGTGTTTTCTATGACGGGAACAGTTGGAGTCCCCATGACAACCATTGAAGCAAGGCTTGAATCTGTGCCTGAGATGGAATATGATGCGCTCTCCAATCAACCCCGTGGAGAAATTTGCTTGAGAGGGAACACCTTGTTCTCCGGTTACCACAAGCGTCAAGATCTTACTGAAGAGGTTATGGTTGATGGTTGGTTTCATACAGGTGACATAGGAGAATGGCTGCCAAATGGAGCAATGAAAATTATTGACAGAAAAAAGAACATCTTCAAATTGTCTCAAGGAGAATATGTTGCTGTGGAGAATATTGAAAACAAGTACTTACAGTGCCCTCTTATAACATCAATTTGGGTTTACGGAAATAGTTTTGAATCTTTCTTGGTGGCAATTGTGATTCCTGAAAAACAAGCCCTCGAGGATTGGGCAGCGAAGCATAATTTGTCTGATGATTTTAAATCTTTATGTGAAAATATAAAGGCAAGAAAATATATTTTGGACGAGCTCAACAGCGTTGATCAGAAACATCAACTTAGAGGTTTTGAGCTGATAAAAGCAGTTCATCTGGAACCAACTCCCTTTGATGTGGAAAGAGATCTAATAACTCCAACATTCAAATTGAAGAGACCACAATTGTTAAAGCACTATAAGGATTGCATTGACCTGCTATACAAGGAAGTAAAGGGAGCAATGGTGTGA 1983 0.413 MVDVYTVKVEEARSATHEKPSAGPVYRCIYAKDGLLELPSHFQSPWDFLRDSAARSPSKPMLGRRHKTDSTKAGPYEWLTYEEAYNAAIQIGSSMRTRGVNPGDRCGIYGSNCPEWIIAMEACNSYAVTYVPLYDTLGPNAVEFIINHAEVSIAFVQQSKIPSILSCLGRCASLKTIVSFGNVSTAQKKEAEELGVSCFSWGEFLQLGNLDLDLPLKNKTSICTIMYTSGTTGEPKGVIIKNEAFMTEVLSIDQILSLTDKAATEDDVYFSFLPLAHVYDQIMVTYSLYKGSSIGFWQGDIRFLMEDIQTLQPTIFCGVPRIYDRVYAGINSKISSEGSWKKTLFQYAYNYKLGYLNSGLPQDKAAPWIHKLVFDKIKHALGGRVRLMLSGAAPLSMNVEEFLRVTFGATLAQGYGLTESCAGCFSAITNVFSMTGTVGVPMTTIEARLESVPEMEYDALSNQPRGEICLRGNTLFSGYHKRQDLTEEVMVDGWFHTGDIGEWLPNGAMKIIDRKKNIFKLSQGEYVAVENIENKYLQCPLITSIWVYGNSFESFLVAIVIPEKQALEDWAAKHNLSDDFKSLCENIKARKYILDELNSVDQKHQLRGFELIKAVHLEPTPFDVERDLITPTFKLKRPQLLKHYKDCIDLLYKEVKGAMV* 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g2246 660 Pfam AMP-binding enzyme 50 522 IPR000873 -
Tpr3g2246 660 Gene3D - 34 514 IPR042099 -
Tpr3g2246 660 CDD LC-FACS_euk 74 653 IPR045311 GO:0004467|GO:0006631
Tpr3g2246 660 PANTHER LONG-CHAIN FATTY ACYL COA LIGASE 2 656 - -
Tpr3g2246 660 ProSitePatterns Putative AMP-binding domain signature. 225 236 IPR020845 -
Tpr3g2246 660 SUPERFAMILY Acetyl-CoA synthetase-like 38 652 - -
Tpr3g2246 660 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 2 656 - -
Tpr3g2246 660 Pfam AMP-binding enzyme C-terminal domain 532 573 IPR025110 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g2246 Tpr-Chr3 21080215 21085902 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g2246 5 654 Acyl Lipid Metabolism Gene Families AT1G64400 54.977 0.0 765
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g2246 K01897 - gmx:100790068 1152.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g2246 3 21080215 21085902 Tpr3g2246 3 21080215 21085902 ECH