Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g2245 ATGTGGAAGAGAATGGATTTTCAACAAGAAACAGCTCAGTTGCTAAACTCAGATTTCAAAGACTTGAGTGATGCTGCTAATAAACTCGCTACTCATGTCATCAAAGTTGCTAGTGTTGGCGGTTTTGGAGCCTCTTTCTTCGGATTTTTTGCTGCTGTTGCTGCTATTTACCTGTTGGTTTTGGATCGCACAAACTGGAAGACGAACATTCTTACATCACTACTCATTCCATACATTTTCTTCAGTTTGCCTTCAATTGTTTTCGGTATCTTCAGAGGAGAGATTGGAAAATGGGTTGCTTTAGTTGCTGTTGTATTAAGGCTTTTTATTCCAAAGCATTTCCCTGATTGGTTGGAATTGCCAGGTGCTTTGATACTTTTGATTGTTGTATCTCCTGAACTAGTCGCAAGCACCTTTAGAAACGACATTGTGGGAGTGATTGTGTGTTTGGTCATTGCATGTTATTTGCTACAAGAACATATCCGTGCATCTGGTGGTTTCAGAAACTCCTTCACTAAAGCAAATGGCGTATCAAATTCCATCGGCATAATTCTTCTGTTAGTCTACCCCGTCTGGGCACTCCTCACCATAATATTTTAG 600 0.4017 MWKRMDFQQETAQLLNSDFKDLSDAANKLATHVIKVASVGGFGASFFGFFAAVAAIYLLVLDRTNWKTNILTSLLIPYIFFSLPSIVFGIFRGEIGKWVALVAVVLRLFIPKHFPDWLELPGALILLIVVSPELVASTFRNDIVGVIVCLVIACYLLQEHIRASGGFRNSFTKANGVSNSIGIILLLVYPVWALLTIIF* 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g2245 199 Pfam Cold acclimation protein WCOR413 8 186 IPR008892 GO:0016021
Tpr3g2245 199 PANTHER COLD-REGULATED 413 PLASMA MEMBRANE PROTEIN 1-RELATED 2 196 - -
Tpr3g2245 199 PANTHER COLD-REGULATED 413 PLASMA MEMBRANE PROTEIN 2 2 196 IPR008892 GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g2245 Tpr-Chr3 21077033 21079924 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g2245 - - gmx:100811430 301.597
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g2245 3 21077033 21079924 Tpr3g2245 3 21077033 21079924 ECH