Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g2239 ATGACAAACACAAAAAGTGCAACCATGTTGATAGAAAGAAATACCAATAATACTAACAACAACAAACTTCATAGACCAACTTTTGGTGCCTTTCTTCACTCCGAACCGACGTTATTTCATGGCTCGAACATCGATGACGATCAAAACCGCATCAGTAACGCCTCAGCCTCCACTGTGAGTCCTCGAACCTATAGCAGCAGCAGCAACAATAATTCACCTAGTTACATGATGTCACCATGGAACCAATCTGCCTCACCTCTCAACAAATCACCATGGTTAATGCCATCTTCAGAAGCAATCAATCTCTTCCATAATAGCCATCATTACGATAACATCAACGACGACAGCTTCTTCCCCGAAAATGGCCTCATCGGATCGCTTGTTCGCGAAGAAGGTCATATCTATTCGTTAGCGGTTACCGGTGACTTATTATACACCGGTTCCGATAGTAAAAATATAAGGGTATGGAAAGAGCTTAAAGATTATACTGGTTTTAAATCAAGCAGTGGTTTGGTTAAAACTATTGTTATCTCCGATGGAAATATCTTCACCGGTCATCAAGATGGAAAAATCAGAGTATGGAAAGTTTCTTCAAAAAATTCAAGAACTCATAAGCGTATTGGAAGTTTACCAACTTTCAAAGATTATGTAAAAAGTTCGATGAATCCGAAGAATTATGTGGAAGTCCGGCGACGGAGAAACGCGGTGAAGGTGAGGCATTTTGACGCAATTTCCAGTCTGAGTTTGGATCAAGATGAAGGGTTGTTGTATTCTGGTTCTTGGGATAAAACTCTAAAAGTTTGGCGAGTTTCTGATTTCAAGTGTTTGGAATCGATTAATGCTCATGATGACGCGGTGAACGCGGTGGTTTTTGCATTTGAGAGCTATGTTTTCACCGGCTCAGCCGACGGAACGGTGAAAATGTGGAAGAGGGAAATGGACGGTAAGAAAACGAAGCACGTGTTGGATAGGGTTCTGTTGAAACAAGAAAACGCGGTGACGGCTTTAACGGTTAACTGTTCATCGACGGTTTTATATTGCGGTTCGTCGGATGGATTGGTTAACTTCTGGGAGCGTCAACAGAAGAATAATCTCACTCACGGTGGCGTTTTAAAGGGACACAAACTCGCTGTCTTGTGTATGGCAACTGCGGGGAATCTTGTTTTTAGTGGTTCAGCCGATAAGAATGTTTGCGTCTGGAAGCGCGATGAAAGTGGGACCCACTTGTGTCTTTCGGTTTTAACGGGACATACAGGTCCCGTTAAATGTATTGCCATTGAAGAACACGAGGAGGAGGTTGTCCGTGAGGAAAATAATCAACGGTGGATAATTTACACCGGAAGTTTAGATAAGTCTGTTAAGGTATGGCGCGTGTCTGAACAAGCGCCAGAGTTGAGATTGTTCCAAGGTTGGACATCTCCGATTGCACCTCCTTATTCTTCCCCGAGAAAAATCAGTGTCACTACCAATAGTAATAGGAGCCAGTTGTAA 1491 0.4272 MTNTKSATMLIERNTNNTNNNKLHRPTFGAFLHSEPTLFHGSNIDDDQNRISNASASTVSPRTYSSSSNNNSPSYMMSPWNQSASPLNKSPWLMPSSEAINLFHNSHHYDNINDDSFFPENGLIGSLVREEGHIYSLAVTGDLLYTGSDSKNIRVWKELKDYTGFKSSSGLVKTIVISDGNIFTGHQDGKIRVWKVSSKNSRTHKRIGSLPTFKDYVKSSMNPKNYVEVRRRRNAVKVRHFDAISSLSLDQDEGLLYSGSWDKTLKVWRVSDFKCLESINAHDDAVNAVVFAFESYVFTGSADGTVKMWKREMDGKKTKHVLDRVLLKQENAVTALTVNCSSTVLYCGSSDGLVNFWERQQKNNLTHGGVLKGHKLAVLCMATAGNLVFSGSADKNVCVWKRDESGTHLCLSVLTGHTGPVKCIAIEEHEEEVVREENNQRWIIYTGSLDKSVKVWRVSEQAPELRLFQGWTSPIAPPYSSPRKISVTTNSNRSQL* 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g2239 496 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 237 271 - -
Tpr3g2239 496 ProSiteProfiles Trp-Asp (WD) repeats profile. 371 401 IPR001680 GO:0005515
Tpr3g2239 496 ProSiteProfiles Trp-Asp (WD) repeats profile. 237 278 IPR001680 GO:0005515
Tpr3g2239 496 ProSiteProfiles Trp-Asp (WD) repeats profile. 326 367 IPR001680 GO:0005515
Tpr3g2239 496 Gene3D - 318 493 IPR015943 GO:0005515
Tpr3g2239 496 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 279 310 - -
Tpr3g2239 496 Pfam WD domain, G-beta repeat 160 195 IPR001680 GO:0005515
Tpr3g2239 496 Pfam WD domain, G-beta repeat 274 310 IPR001680 GO:0005515
Tpr3g2239 496 Pfam WD domain, G-beta repeat 369 401 IPR001680 GO:0005515
Tpr3g2239 496 Pfam WD domain, G-beta repeat 410 456 IPR001680 GO:0005515
Tpr3g2239 496 Pfam WD domain, G-beta repeat 240 268 IPR001680 GO:0005515
Tpr3g2239 496 Pfam WD domain, G-beta repeat 131 157 IPR001680 GO:0005515
Tpr3g2239 496 PRINTS G protein beta WD-40 repeat signature 256 270 IPR020472 -
Tpr3g2239 496 PRINTS G protein beta WD-40 repeat signature 297 311 IPR020472 -
Tpr3g2239 496 PRINTS G protein beta WD-40 repeat signature 444 458 IPR020472 -
Tpr3g2239 496 CDD WD40 131 457 - -
Tpr3g2239 496 SUPERFAMILY WD40 repeat-like 125 463 IPR036322 GO:0005515
Tpr3g2239 496 SMART WD40_4 407 457 IPR001680 GO:0005515
Tpr3g2239 496 SMART WD40_4 364 401 IPR001680 GO:0005515
Tpr3g2239 496 SMART WD40_4 319 358 IPR001680 GO:0005515
Tpr3g2239 496 SMART WD40_4 272 310 IPR001680 GO:0005515
Tpr3g2239 496 SMART WD40_4 234 269 IPR001680 GO:0005515
Tpr3g2239 496 SMART WD40_4 120 157 IPR001680 GO:0005515
Tpr3g2239 496 SMART WD40_4 158 195 IPR001680 GO:0005515
Tpr3g2239 496 ProSiteProfiles Trp-Asp (WD) repeats profile. 279 310 IPR001680 GO:0005515
Tpr3g2239 496 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 15 472 IPR045182 -
Tpr3g2239 496 Gene3D - 6 317 IPR015943 GO:0005515
Tpr3g2239 496 PANTHER EN/SPM-LIKE TRANSPOSON PROTEIN-LIKE 15 472 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g2239 Tpr-Chr3 21006981 21009318 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g2239 238 456 Miscellaneous Gene Families AT5G08390 26.126 6.90e-11 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g2239 - - gsj:114379287 678.322
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g2239 3 21006981 21009318 Tpr3g2239 3 21006981 21009318 ECH