Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g2227 ATGGTGTATGCTTCACTCTCATTATCATCACTTCCACTTTCGATCTCGCCGGCTTTCAGCCCCAAAAGGCCAAACTGCTTTCAATTTTCTGAAGTTTCCAACAAATTCAATTCCAGGCCTTCGCCAATGACTCCGTCTTGTTGCTCTCAGGAACGGAGCACTGCAGTTCAAGAATATGGGCAAGATGAGAGCATTGGGACGGTGAACACCGCATCAATCACAAACAACACCGCTTTGTGCAACAATTCACCAGAGCTTCAGAAGAGAAGCCAACCTCCTCTAGTCAGTGCACTGAAAGCCTCAGCTGAAGCAAATGCTGCCAGTTTTCACTTTCCTGGACATAACAGAGGCCATGCCGCTCCTGCTTCATTGACTCGACTCATTGGAATAAGACCGTACGCTCATGATTTGTCCAGCATTCCGGAACTTGACAACCTCTTTTGTCCCCAAGGACCCATATTAGAAGCACAAAAAGAAGCAGCTAAACTGTTTGGATCATCAGAAACATGGTTTCTTGTCAACGGTACTACTTGTGGGGTCCAGGCGGCAATAATGGCAACCTGTTCACCGGGAGAATTTCTGATTCTTCCGAGGAATTGTCATTTATCGGCTATATCTGCCTTGGTATTATCTGGTGCAGTGCCTAAGTACATTGTTCCTGATTATAAAAATGATTGGGACATCGCTGGTGGCGTCACTCCATTACAAGTATTGAACGCTATCCAAGAACTAGAACTCGACGGAAAAAAAGCAGCAGCAGTTTTCATCACTTCACCCACTTATCATGGTGTTTGCAGTAACTTGAGCGACATTTCTGAGTTGTGTCATTCTCAGAAAATTCCTTTGATCGTTGATGAAGCTCATGGTGCACATCTAGGATTTCATCCTAAACTCCCTAGCTCAGCCCTCCAGCAAGGGGCTGATCTCATTGTACAGTCTACTCATAAGGTTCTTTGCTCTTTCACTCAGTCATCTATGCTGCACATGTCAGGTGACATTGTAGATAAGGAAAATATATCTAGGTGTCTCCAAACTCTCCAAAGCACAAGTCCTAGTTACCTGCTTTTGGCATCCCTAGATGCTGCTAGAGCTCAACTTAGTGAAAGCCCTGATATTTTATTCGACCAAGCAATTGCACTAGCCAATGAAGCAAAGTGCTTGCTAAAGCAAATCCCTGGAATCTCAGTACTTGATAATTCAAGCTTTCCGAACTTTCCTGCATTTGATCCATTGCGGCTTACTATAGGTTTTTGGGAGCTTGGTATTTCAGGTTACAAAGCAAATGAAGTCTTATGCAGGGATTTCGGAATCGTCCGTGAACTTGTTGGGAATAAATCTATCACTTATGCACTTAATCTTGGAACTTGTAGAGACCATGTCCAAAGGCTTATATCGGGAGTGAAGTATTTAGCTGCAACATGTTCTACTGTTCAGCAACCTAAAGACAGGTTGCTTACTGATCATGCACCCTTTGATGATATAATCATGAGTTTGACCCCTAGAGATGCATTTTTTGCAAGTAAAAGAAAAGTAACGGTGAAGGAGAGCATCGGTAAGGTTTCGGGGGAGCTTATATGTCCATACCCTCCAGGCATACCAGTATTGATCCCCGGCGAGGTTATTACTGAGAGAGCTGTCGATTATCTACTCAGTGTAAGAAGTAAAGGTGCTGATATTAGTGGAGCATCTGACCCCTTACTTTCATCTATAGTTGTCGCCAATGTAGGTGGTGAGAACTATTAG 1743 0.4372 MVYASLSLSSLPLSISPAFSPKRPNCFQFSEVSNKFNSRPSPMTPSCCSQERSTAVQEYGQDESIGTVNTASITNNTALCNNSPELQKRSQPPLVSALKASAEANAASFHFPGHNRGHAAPASLTRLIGIRPYAHDLSSIPELDNLFCPQGPILEAQKEAAKLFGSSETWFLVNGTTCGVQAAIMATCSPGEFLILPRNCHLSAISALVLSGAVPKYIVPDYKNDWDIAGGVTPLQVLNAIQELELDGKKAAAVFITSPTYHGVCSNLSDISELCHSQKIPLIVDEAHGAHLGFHPKLPSSALQQGADLIVQSTHKVLCSFTQSSMLHMSGDIVDKENISRCLQTLQSTSPSYLLLASLDAARAQLSESPDILFDQAIALANEAKCLLKQIPGISVLDNSSFPNFPAFDPLRLTIGFWELGISGYKANEVLCRDFGIVRELVGNKSITYALNLGTCRDHVQRLISGVKYLAATCSTVQQPKDRLLTDHAPFDDIIMSLTPRDAFFASKRKVTVKESIGKVSGELICPYPPGIPVLIPGEVITERAVDYLLSVRSKGADISGASDPLLSSIVVANVGGENY* 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g2227 580 Pfam Orn/Lys/Arg decarboxylase, C-terminal domain 498 556 IPR008286 GO:0003824
Tpr3g2227 580 CDD Orn_deC_like 93 385 IPR000310 GO:0003824
Tpr3g2227 580 PANTHER ARGININE DECARBOXYLASE 68 574 - -
Tpr3g2227 580 Pfam Orn/Lys/Arg decarboxylase, major domain 92 390 IPR000310 GO:0003824
Tpr3g2227 580 Gene3D - 92 371 IPR015421 GO:0003824
Tpr3g2227 580 Gene3D - 475 575 - -
Tpr3g2227 580 SUPERFAMILY Ornithine decarboxylase C-terminal domain 431 574 IPR036633 GO:0003824
Tpr3g2227 580 PANTHER ARGININE DECARBOXYLASE 68 574 - -
Tpr3g2227 580 SUPERFAMILY PLP-dependent transferases 92 465 IPR015424 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g2227 Tpr-Chr3 20886378 20890003 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g2227 - - mtr:MTR_4g068240 920.228