Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g2226 ATGGTGTATGCTGCTGCTTCACTCTCACTCTCGCCCCCTTTCACTCCCAAAAACTCAAAATGCATTTTACCTTTCCATTTTCTTAAATTTTCCAACAAATTCAATTTCAGACCTTCGCCAACGATTCCATCTTGTTGCTCTCAGAAAAGAAGCATTGCACTGCCGGAACATGGGCAAGATGAGAGAATTGGGACAGTGAACACTGCGTCAATCACAAACAAGCCCGTTTCATTCAGCAATTCACTAGATATTCAGCAAGGTGGCCTGCCTCCTCTAGTTAGCGCATTGAAAGCTTCAGCTGAAGAAAATGCTGCCACTTTTCACTTTCCTGGACATAACAGAGGCCATGCTGCTCCGGCTTCGATGACTCAACTCATTGGAATAAGACCATATGTTCATGATTTGCCTGAGCTTCCTGAACTTGACAACCTCTTTTGTCCCCAAGGGCCCATATTAGAAGCACAAACAAAAGCAGCCAAACTGTTTGGATCATCAGAGACATGGTTTCTTGTCGGAGGCACTACTTGTGGGATCCAGGCAGCAATAATGTCAACCTGTTCACCGGGAGAATTTCTGATTCTTCCTAGGAATTGTCATTTATCGGCTATATCTGCGATGGTATTATCTGGTGTAGTGCCTAAGTACATTGTCCCTAACTATAAAAATGATTGGGACATCGCTGGCGGTGTCACTCCATTACAGGTATTGAATGCTATCCAGGAACTGGAATTGGAAGGAAAAAAAGCAGCAGCAGTTTTCATCACTTCACCTACTTATCACGGTATTTGCAGTAACTTGAACGACATATCTGAGTTGTGTCATTCACATAAGATTCCTTTGATTGTTGATGAAGCTCATGGTGCACATCTAGGATTTCATTCTGAACTGCCTAGCTCAGCCCTCCAGCAAGGTGCTGATCTAACTGTACAGTCTACTCACAAGGTTCTATGCTCTCTTACTCAGTCATCTATGCTGCACATGTCAGGCAACATTGTAGATAAAGAAAAAATATCCAGGTGTCTCCAAACTCTCCAAACCACAAGTCCTAGTTACCTGCTTTTGGCATCTCTAGATGCTGCTAGAGCTCAACTTGGTGAAAGCCCTGAAATTGTATTCAACCCAGCGATTGCATTAGCAAATGAAGCCAAGTGCTTACTAAAACGAATCTCTGGCATCTCATTGCTTGAGAATTCAAGCTTTTCAAACTTTCCTGCGATTGATCCTTTGCGGCTTACTGTAGGTTTTTGGGAACTTGGTTTATCAGGTTATGAAGCAGATGAAATCTTATGTAGGGATTTTGGAATCATCTGTGAACTCGTTGGGAATAAATCTATCACTTTTGCACTGAATCTTGGAACTTGTAGGGACCATGTCCAAAGGCTTTTATCAGGAATAAAGCATCTAGCTGCCACATGTTTTTCCATCAAGCAGCCCAAAGACAGATTGGTTACCGATCATGCACCCTTTGATGATATAATCATGAGCTTAATCCCTAGAGATGCATTTTTTGCAAATAAAAGAAAAGTAACAGTGAAGGAGAGCATCGGTAAGGTTTCGGGGGAGCTTATATGTCCATACCCTCCAGGCATACCGGTATTGATCCCCGGTGAGGTTATTACTGAGAGAGCCGTCGATTATCTACTCCATTTAATCAGTAAAGGTGCTGACATTATTGGAGCATCTGATCCCTTACTTTCTTCTATAGTTATCTGCGATGTACAGTAA 1725 0.4243 MVYAAASLSLSPPFTPKNSKCILPFHFLKFSNKFNFRPSPTIPSCCSQKRSIALPEHGQDERIGTVNTASITNKPVSFSNSLDIQQGGLPPLVSALKASAEENAATFHFPGHNRGHAAPASMTQLIGIRPYVHDLPELPELDNLFCPQGPILEAQTKAAKLFGSSETWFLVGGTTCGIQAAIMSTCSPGEFLILPRNCHLSAISAMVLSGVVPKYIVPNYKNDWDIAGGVTPLQVLNAIQELELEGKKAAAVFITSPTYHGICSNLNDISELCHSHKIPLIVDEAHGAHLGFHSELPSSALQQGADLTVQSTHKVLCSLTQSSMLHMSGNIVDKEKISRCLQTLQTTSPSYLLLASLDAARAQLGESPEIVFNPAIALANEAKCLLKRISGISLLENSSFSNFPAIDPLRLTVGFWELGLSGYEADEILCRDFGIICELVGNKSITFALNLGTCRDHVQRLLSGIKHLAATCFSIKQPKDRLVTDHAPFDDIIMSLIPRDAFFANKRKVTVKESIGKVSGELICPYPPGIPVLIPGEVITERAVDYLLHLISKGADIIGASDPLLSSIVICDVQ* 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g2226 574 Gene3D - 90 369 IPR015421 GO:0003824
Tpr3g2226 574 Pfam Orn/Lys/Arg decarboxylase, C-terminal domain 505 550 IPR008286 GO:0003824
Tpr3g2226 574 CDD Orn_deC_like 91 383 IPR000310 GO:0003824
Tpr3g2226 574 PANTHER ARGININE DECARBOXYLASE 67 572 - -
Tpr3g2226 574 SUPERFAMILY Ornithine decarboxylase C-terminal domain 428 571 IPR036633 GO:0003824
Tpr3g2226 574 SUPERFAMILY PLP-dependent transferases 90 468 IPR015424 -
Tpr3g2226 574 Gene3D - 471 568 - -
Tpr3g2226 574 PANTHER ARGININE DECARBOXYLASE 67 572 - -
Tpr3g2226 574 Pfam Orn/Lys/Arg decarboxylase, major domain 90 395 IPR000310 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g2226 Tpr-Chr3 20880469 20884710 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g2226 - - mtr:MTR_4g068240 892.108