Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g2215 ATGGGAATAATCACAACTCATCTTGTTAAGCTTTTGCTTTTCTTTCTATTCACTTTTCATTCTTCCTTTGGAGAAGTCTTTTTTGAAGAGACATTCCAAGATGGATGGAAGAGTCGTTGGGTGTTGTCTGATTGGAAAAGGAGTGAAGGAAAAGCAGGTACCTTTAAGTACACAGCTGGAAAATGGCCTGGTGATCCTGATGACAAAGGTATTCAGACTTATAATGATGCCAAGCATTTTGCCATATCTGCAAAGATACCTGAGTTGACTAATAAGAACCGAACCCTGGTTGTTCAGTACTCTATTAAATTTGAGCAGGATATTGAGTGTGGTGGTGGTTACATCAAACTTCTTTCTGGTTATGTAAATCAAAAGAAGTTTGGCGGTGATACTCCTTATAGTTTGATGTTTGGACCAGATTTATGCGGAACACAGACAAAGAAGCTCCATGTTATATTGTCCTACCAAGGGCAGAATTATCCTATTAGAAAGGATTTGGAGTGTGAAACAGACAAATTAACTCATTTCTATACATTCATTTTAAGGCCTGATGCCTCCTATAGTGTTCTTGTCGATAATCGAGAAAGAGATTCCGGAAGCATGTACACAGATTGGGACATCCTTCCTCCAAGGAAAATTAAAGATGTTAAAGCCAAAAAGCCAGCAGATTGGGACGATAGAGAGTATATTGAGGACCCTAATGATGTCAAACCAGAGGGATATGATTCAATTCGAGCTGGAATTCCCGATCCAAAAGCCAAGAAGCCTGTTGACTGGGATGATGAAGATGATGGACTTTGGAAGCCCCCCAAAGTTCCTAATCCAGCATACAAAGGACCGTGGAAACGAAAGAAAATCAAGAACCCCAACTACAAGGGAAAGTGGAAGACTCCATGGATTGATAACCCAGAATTTGAGGATGATCCTGATCTTTACGTGTTGAAACCGATAAAGTATGTGGGCATTGAAGTGTGGCAGGTGAAGGCTGGTTCAATTTATGACAACATCTTAATTTGTGATGATCCACAGTATGCAAAGCAAGTTGTGGAAGAATTTATGGTTAATAATAGAGAGGCTGAAAAAGAAGCTTTTGAAGAAGCAGAAAAAGAAAGAAGGGCTCGAGAAGAAAAGGAGGCACAAAGGGCAAGAGAAGAGGGAGAAAGGAGGAGGAGAGAGAGGGACAGTAGATATGGAGATAAGAGGCGCCGTAGAAGGCCGGATCCCCATGAATACGATGATTATGAACATGATGAGCTTTGA 1260 0.4071 MGIITTHLVKLLLFFLFTFHSSFGEVFFEETFQDGWKSRWVLSDWKRSEGKAGTFKYTAGKWPGDPDDKGIQTYNDAKHFAISAKIPELTNKNRTLVVQYSIKFEQDIECGGGYIKLLSGYVNQKKFGGDTPYSLMFGPDLCGTQTKKLHVILSYQGQNYPIRKDLECETDKLTHFYTFILRPDASYSVLVDNRERDSGSMYTDWDILPPRKIKDVKAKKPADWDDREYIEDPNDVKPEGYDSIRAGIPDPKAKKPVDWDDEDDGLWKPPKVPNPAYKGPWKRKKIKNPNYKGKWKTPWIDNPEFEDDPDLYVLKPIKYVGIEVWQVKAGSIYDNILICDDPQYAKQVVEEFMVNNREAEKEAFEEAEKERRAREEKEAQRAREEGERRRRERDSRYGDKRRRRRPDPHEYDDYEHDEL* 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g2215 419 PIRSF Calreticulin 4 419 IPR009169 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Tpr3g2215 419 Pfam Calreticulin family 28 263 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Tpr3g2215 419 Pfam Calreticulin family 265 338 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Tpr3g2215 419 ProSitePatterns Calreticulin family signature 1. 103 118 IPR018124 GO:0005509
Tpr3g2215 419 Coils Coil 350 394 - -
Tpr3g2215 419 PANTHER CALRETICULIN-3 8 419 - -
Tpr3g2215 419 PRINTS Calreticulin signature 105 123 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Tpr3g2215 419 PRINTS Calreticulin signature 131 147 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Tpr3g2215 419 PRINTS Calreticulin signature 220 233 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Tpr3g2215 419 PRINTS Calreticulin signature 248 270 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Tpr3g2215 419 PRINTS Calreticulin signature 286 305 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Tpr3g2215 419 PRINTS Calreticulin signature 319 339 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Tpr3g2215 419 SUPERFAMILY Concanavalin A-like lectins/glucanases 21 223 IPR013320 -
Tpr3g2215 419 MobiDBLite consensus disorder prediction 359 419 - -
Tpr3g2215 419 Gene3D Calreticulin/calnexin, P domain 210 311 IPR009033 GO:0005509|GO:0005515
Tpr3g2215 419 MobiDBLite consensus disorder prediction 359 412 - -
Tpr3g2215 419 ProSitePatterns Calreticulin family signature 2. 135 143 IPR018124 GO:0005509
Tpr3g2215 419 PANTHER CALRETICULIN AND CALNEXIN 8 419 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Tpr3g2215 419 SUPERFAMILY P-domain of calnexin/calreticulin 206 321 IPR009033 GO:0005509|GO:0005515
Tpr3g2215 419 Gene3D - 25 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g2215 Tpr-Chr3 20757950 20776165 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g2215 9 346 Miscellaneous Gene Families AT5G61790 33.501 1.79e-57 195
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g2215 K08057 - gmx:100802428 696.427