LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tpr3g2204	ATGGCAGTTACATCGTTGTTCCGCACTATTCATAGAGCTTCATCTATTATCAAATCCTCGTTTTCGGTCTCTCCCAGGTTAGTTGGGAGCGGTCAATTATATTCTATATGTTCTCCATTGAGGCATTGTATGCATTTTGAGAAGCAAGGTTTTTGGTGGGGTTTGAGAGAGTTGAGTTATGGGAAGGTTAATCTTGTGATAAGGGATGGGAAGACTAAGTTTGAGGCTCATGAGATTGAGCCTCCAAGGAAAGATAAGTGGAAGACTAAGAAGAAGTTGAAGATGCAAAGGAAGAGAGAGAAGGAGAAGAGGAAAGCGGCGGATAGGAGAAATCCTAGTCGACTTGGTGTTAAAGGGAAGAAAAAGAAGCATAAGTTTGCTACTCCTGAAGAGAGAATTAAGTTCAAGATTGATAATGCGAGAGTCAAAGAAGCGTTACTCATTGAAAGGCTCAAACGATACGAAGTTGCTAAAGCTCAGGGTCCCGAAGTAAAACCAGATGGCTTGACGGGGGAGGAACGGTTTTATCTGAAGAAAATGGCTCAGAAGAGTTCTAATTATCTACAAGTTGGAAGAAGAGGATTATTCGGAGGGGTTATTCTCAATATGCATTTGCATTGGAAGAAACATGAGACTGTTAAGTGCATTTGCAAGCCTTGTAAACCTGGTCAAGTACACGAGTATGCGCAAGAACTTGCCAGATTGAGTGGTGGTATTCCAATTCACATCATAGGTGATGACACTATAATATTTTATCGTGGAAAGAACTATATACGGCCTGAGGTTATGTCACCGGTAGATACATTGTCCAAGAAAAAGGCACTTGAAAAATCCAAGTATGAGCAATCACTCGAGTCAGTAAGGCGTTTCATTGCTATCGCGGAGAAAGAATTGGAGCTATATCACAGACACGTTGCACTTTATGGCGACCCTAGCAACCGCAATCCCTTGTCTATACTCGACGGTCCAAGTAGAAGCTCCATGGAAAAGAGGAATTACGGCGAAAAGAACCATGATTCGAGTAGCTATTATCTTTCAGAAACAGAAGCTGATTCCTCGCAGTCGGAGCTATCAGAATCTGAAGATAACCTTGAAAACGGGAACTTGTCAATGAGTGAATCAGATTCTGAAGAGGGCGACATGTTGGTTTCCGATGATGATCAAGAAAGAGAAGTATATTTTAGTAAAATGCAAAATCAAGATTCATCATCAATGTCTAAACATGCCCACCAGTATAGGAATCAACATTTGTTATCTTAA	1260	0.4103	MAVTSLFRTIHRASSIIKSSFSVSPRLVGSGQLYSICSPLRHCMHFEKQGFWWGLRELSYGKVNLVIRDGKTKFEAHEIEPPRKDKWKTKKKLKMQRKREKEKRKAADRRNPSRLGVKGKKKKHKFATPEERIKFKIDNARVKEALLIERLKRYEVAKAQGPEVKPDGLTGEERFYLKKMAQKSSNYLQVGRRGLFGGVILNMHLHWKKHETVKCICKPCKPGQVHEYAQELARLSGGIPIHIIGDDTIIFYRGKNYIRPEVMSPVDTLSKKKALEKSKYEQSLESVRRFIAIAEKELELYHRHVALYGDPSNRNPLSILDGPSRSSMEKRNYGEKNHDSSSYYLSETEADSSQSELSESEDNLENGNLSMSESDSEEGDMLVSDDDQEREVYFSKMQNQDSSSMSKHAHQYRNQHLLS*	420

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tpr3g2204	419	MobiDBLite	consensus disorder prediction	395	419	-	-
	Tpr3g2204	419	SMART	CRS1_YhbY_2	169	253	IPR001890	GO:0003723
	Tpr3g2204	419	Gene3D	-	169	267	IPR035920	-
	Tpr3g2204	419	MobiDBLite	consensus disorder prediction	338	377	-	-
	Tpr3g2204	419	ProSiteProfiles	CRM domain profile.	167	264	IPR001890	GO:0003723
	Tpr3g2204	419	PANTHER	GROUP II INTRON SPLICING FACTOR CRS1-LIKE	6	383	IPR040286	-
	Tpr3g2204	419	MobiDBLite	consensus disorder prediction	80	123	-	-
	Tpr3g2204	419	MobiDBLite	consensus disorder prediction	322	419	-	-
	Tpr3g2204	419	Coils	Coil	90	110	-	-
	Tpr3g2204	419	SUPERFAMILY	YhbY-like	169	263	IPR035920	-
	Tpr3g2204	419	PANTHER	GROUP II INTRON SPLICING FACTOR CRS1-LIKE	6	383	-	-
	Tpr3g2204	419	Pfam	CRS1 / YhbY (CRM) domain	169	253	IPR001890	GO:0003723

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tpr3g2204	Tpr-Chr3	20646375	20649231	Dispersed/Transposed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tpr3g2204	-		-	gmx:100796393	528.094