Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g2181 ATGGCATTAAGCAATAGATATCTCCTATTTTCTCTCTTACATTTAGTTTCAACATTCATCATTACTTTAACACAAGGTGAACAAATAATTAATACACTGCAGCTAGCTTCATTGAATAGGAATGATTTCCCCAAAGGCTTCATCTTTGGCACAGCATCTTCTGCATATCAATATGAAGGTGCAGCAAGTGAAGGTGGAAGAGGACCAAGTATTTGGGATACTTTCACTCATAGATATCCACAAAAAATCATGGATGGAAACAATGGAGATGTTGCAATTGACTCATATCATCGTTATAAGGAAGATGTTGGCATCATGAAGGATATGAACTTAGATGCATATAGATTTTCCATTTCTTGGTCTAGAATACTTCCAAATGGAAAACTAAGTGGAGGAATTAATCAGGAAGGAATCGACTATTACAACAACCTCATCAATGAATTGGTGGCAAATGGTTTACAACCATTTGTAACTCTTTTTCATTGGGATCTTCCTCAAGCTCTTGAAGATGAATATGGTGGCTTCTTAAGTCCTCTCATTATAAAAGACTTCCAAGATTATGCAGAGCTTTGCTTTAAAACATTTGGAGACAGGGTAAAACATTGGATAACTTTGAATGAGCCATGGACTTACAGTCAAAATGGATATGCAAATGGTGCAATGGCACCAGGCCGTTGCTCCTCATGGTTTAATCCAAATTGTACCGGTGGTGATTCTGGAACAGAACCTTATTTAGTTTCACATTATCAACTTCTGGCTCATGCTTCTGCGGTTAATGTGTACAAGACCAAATATCAGGTTTGTCAAAATGGCTTGATAGGTATAACATTGGTCATAAATTGGTTTGTTCCGCTCTCAGATAATAAACTTAATCAAAAAGCTACCGAACGAGCTTTCGACTTTATGTTTGGATGGTTTATGGATCCCCTAGTTAATGGAGATTATCCAAAAACCATGCGAGCCTTGGTTAGAACACGGTTACCAAAATTTACTAAAGAACAATCTAGGCTAGTCAGTGGTTCATTTGATTTTATTGGCGTAAACTATTACTCTTCTTGTTATGCTTCTAATGCACCACAATTAAGCAATGCAAATTCTAGCTACTTAACAGATTCACTGTCACTTTTTTCATTTACACGTGATGGAAAATCAATTGGTCTAAATGTTGCTTCAGATTGGTTGTATGTTTATCCAAAAGGAATTCGAGATTTTCTAGTATACGCCAAAGAAAAATACAACAACCCTTTAATTTATATCACTGAAAACGGTATAAATGAGTACGATGATCCTTCATTATCACTTGAGGAATCTCTTCTTGATACTTATAGAATTGATTACCATTATCGTCATCTTTTTTATCTGAGAGAGGCAATCAACGCTGGTGTAAATATAAAGGGATACTTTGCATGGTCATTGTTGGACAATTTTGAATGGCAAAGAGGTTATACTGTGAGATTTGGAATGACATTTATAGATTACAGAAATGGTTTGAAAAGATACCAAAAGCTCTCAGGATTGTGGTTCAAAACGTTTCTCACGCCAGATACCAAACATTACATAAGCTCCATTTAA 1572 0.3575 MALSNRYLLFSLLHLVSTFIITLTQGEQIINTLQLASLNRNDFPKGFIFGTASSAYQYEGAASEGGRGPSIWDTFTHRYPQKIMDGNNGDVAIDSYHRYKEDVGIMKDMNLDAYRFSISWSRILPNGKLSGGINQEGIDYYNNLINELVANGLQPFVTLFHWDLPQALEDEYGGFLSPLIIKDFQDYAELCFKTFGDRVKHWITLNEPWTYSQNGYANGAMAPGRCSSWFNPNCTGGDSGTEPYLVSHYQLLAHASAVNVYKTKYQVCQNGLIGITLVINWFVPLSDNKLNQKATERAFDFMFGWFMDPLVNGDYPKTMRALVRTRLPKFTKEQSRLVSGSFDFIGVNYYSSCYASNAPQLSNANSSYLTDSLSLFSFTRDGKSIGLNVASDWLYVYPKGIRDFLVYAKEKYNNPLIYITENGINEYDDPSLSLEESLLDTYRIDYHYRHLFYLREAINAGVNIKGYFAWSLLDNFEWQRGYTVRFGMTFIDYRNGLKRYQKLSGLWFKTFLTPDTKHYISSI* 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g2181 523 SUPERFAMILY (Trans)glycosidases 34 512 IPR017853 -
Tpr3g2181 523 ProSitePatterns Glycosyl hydrolases family 1 N-terminal signature. 47 61 IPR033132 -
Tpr3g2181 523 ProSitePatterns Glycosyl hydrolases family 1 active site. 417 425 IPR018120 -
Tpr3g2181 523 PRINTS Glycosyl hydrolase family 1 signature 341 355 IPR001360 GO:0004553|GO:0005975
Tpr3g2181 523 PRINTS Glycosyl hydrolase family 1 signature 417 425 IPR001360 GO:0004553|GO:0005975
Tpr3g2181 523 PRINTS Glycosyl hydrolase family 1 signature 440 451 IPR001360 GO:0004553|GO:0005975
Tpr3g2181 523 PRINTS Glycosyl hydrolase family 1 signature 461 478 IPR001360 GO:0004553|GO:0005975
Tpr3g2181 523 PRINTS Glycosyl hydrolase family 1 signature 485 497 IPR001360 GO:0004553|GO:0005975
Tpr3g2181 523 PANTHER GLYCOSYL HYDROLASE 7 517 IPR001360 GO:0004553|GO:0005975
Tpr3g2181 523 PANTHER GLYCOSIDE HYDROLASE FAMILY 1 PROTEIN 7 517 - -
Tpr3g2181 523 Gene3D Glycosidases 27 513 - -
Tpr3g2181 523 Pfam Glycosyl hydrolase family 1 40 513 IPR001360 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g2181 Tpr-Chr3 20216941 20219650 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g2181 6 518 Glycoside Hydrolase AT5G44640 54.369 0.0 585
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g2181 - K01188 gmx:100792870 856.284
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g2181 3 20216941 20219650 Tpr3g2181 3 20216941 20219650 ECH