Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g2178 ATGACATTCAATTACCTTCTCCTCTTCATAATTTCTTTTGTTCTTTTTCTTGGTAATTCAAATATGGTGAATTGCATAGAAAATATTGAAGTTGAACCCATAATTGATATTGCTTCATTCAATAGGAATAGTTTCCCTCAAGACTTTATCTTTGGAGCAGGTTCCTCTTCCTACCAGTTTGAAGGTGCAGTAGCCGAAGGTGGTAGAACACCAAGTATATGGGACACATTTACTCATAGATATCCTGAAAAGATCAAGGATGGAAGCAATGGAGATGTAGCCATTGACACATATCACAAATACAAGGAAGATGTTCAGATAATAAAAGATATGAACTTGGATTCATACAGATTTTCCATTTCATGGTCTAGAATGTTGCCAAATGGAAAGCTTAGTGGTGGTGTAAATCAAGAAGGAATCAACTATTACAACAACCTCATCAATGAACTACTAGCTAATGGTATACAACCATTATTGACTCTTTTCCATTGGGATCTCCCTCAAACTTTGGAAGATGAGTATGGTGGTTTCTTAAGCCCTCTCATAATAAAAGATTTTCAAGATTATGCAGAACTTTGTTTCAAAGAATTTGGTGATAGAGTCAAATATTGGGTTACATTGAATGAACCATGGAGCTACAGCCAAAATGGCTATGCAAACGGGAGAATGGCACCAGGTCGTTGCTCTAGTTGGTTGAATCTAAATTGTACTGGTGGTGATTCTGCAACAGAACCTTATATTGTTACACACAACCAACTTCTTGCACATGCTGCAGCCGTTGATGTATACAAGAAAAAATATCAGGAATCTCAAAATGGTGAAATAGGCATAACAATGGTAGCTAATTGGTATCTTCCACTTTCAGATTCCAAATCCGACCAAAAAGCAGCACAAAGAGCAATTGATTTCATGTATGGATGGTTTATGGATCCATTAACATCAGGAGATTACCCCAAAAGCATGAGATCTCTTGTTGGCTATAGGTTGCCTAAATTTACTGCAAAGCAAGCTAGACAGCTCATTGGTTCATTTGATTTTATTGGTTTGAACTATTACTCTTCAACATATGCCTCTGATGCACTTTTGTCAAGCAATGCTAGACCTAGCTACTTAACAGATTCTTTGGTCACTCCAGCATTCGAGCGCAACGGAAAATCCATTGGTATTAAGATTGCTTCAGATTGGTTGTATGTGTATCCAAGAGGAATTCGTGACCTTCTATTATACACCAAAGAAAAGTACAATAACCCTTCTATTTACATAACTGAAAATGGTATAAATGAATACACGGATTCTACGTTATCTGTAGAGGAATCGCTGATGGATACTTTTCGAATTGATTACCATTATCGTCATTTATTTTATATTCGATCAGCTATTAGGGAAGGTGCAAATGTCAAGGGTTATTATGTATGGTCTTTGTTCGACAATTTTGAATGGTCATCAGGTCATAGCGTAAGATTTGGCATGACCTTTATAGATTACAAGAATGGCTTAAAAAGATACCAAAAGTTGTCTGCATTGTGGTTCAAGAATTTTCTAAAAAAAGAAACTAGACTTATGTTTCTATTGAGAAAGGTTATGACATTCATTCATTAA 1599 0.3596 MTFNYLLLFIISFVLFLGNSNMVNCIENIEVEPIIDIASFNRNSFPQDFIFGAGSSSYQFEGAVAEGGRTPSIWDTFTHRYPEKIKDGSNGDVAIDTYHKYKEDVQIIKDMNLDSYRFSISWSRMLPNGKLSGGVNQEGINYYNNLINELLANGIQPLLTLFHWDLPQTLEDEYGGFLSPLIIKDFQDYAELCFKEFGDRVKYWVTLNEPWSYSQNGYANGRMAPGRCSSWLNLNCTGGDSATEPYIVTHNQLLAHAAAVDVYKKKYQESQNGEIGITMVANWYLPLSDSKSDQKAAQRAIDFMYGWFMDPLTSGDYPKSMRSLVGYRLPKFTAKQARQLIGSFDFIGLNYYSSTYASDALLSSNARPSYLTDSLVTPAFERNGKSIGIKIASDWLYVYPRGIRDLLLYTKEKYNNPSIYITENGINEYTDSTLSVEESLMDTFRIDYHYRHLFYIRSAIREGANVKGYYVWSLFDNFEWSSGHSVRFGMTFIDYKNGLKRYQKLSALWFKNFLKKETRLMFLLRKVMTFIH* 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g2178 532 Pfam Glycosyl hydrolase family 1 42 517 IPR001360 GO:0004553|GO:0005975
Tpr3g2178 532 PANTHER GLYCOSIDE HYDROLASE FAMILY 1 PROTEIN 4 521 - -
Tpr3g2178 532 PANTHER GLYCOSYL HYDROLASE 4 521 IPR001360 GO:0004553|GO:0005975
Tpr3g2178 532 ProSitePatterns Glycosyl hydrolases family 1 N-terminal signature. 49 63 IPR033132 -
Tpr3g2178 532 Gene3D Glycosidases 26 524 - -
Tpr3g2178 532 SUPERFAMILY (Trans)glycosidases 34 515 IPR017853 -
Tpr3g2178 532 PRINTS Glycosyl hydrolase family 1 signature 343 357 IPR001360 GO:0004553|GO:0005975
Tpr3g2178 532 PRINTS Glycosyl hydrolase family 1 signature 419 427 IPR001360 GO:0004553|GO:0005975
Tpr3g2178 532 PRINTS Glycosyl hydrolase family 1 signature 442 453 IPR001360 GO:0004553|GO:0005975
Tpr3g2178 532 PRINTS Glycosyl hydrolase family 1 signature 463 480 IPR001360 GO:0004553|GO:0005975
Tpr3g2178 532 PRINTS Glycosyl hydrolase family 1 signature 487 499 IPR001360 GO:0004553|GO:0005975
Tpr3g2178 532 ProSitePatterns Glycosyl hydrolases family 1 active site. 419 427 IPR018120 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g2178 Tpr-Chr3 20177041 20180220 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g2178 40 519 Glycoside Hydrolase AT5G44640 55.717 0.0 575
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g2178 - K01188 gmx:100776708 865.529
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g2178 3 20177041 20180220 Tpr3g2178 3 20177041 20180220 ECH