Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g2170 ATGCTTATGCAACAAATTAATTTAAAACCAAATTGTCTCATCTTGCAAAAGCCATGTCTCAATGGCATTGGCAATAACCAACCATGTTTTAAGGTTGGGTCATCAAGGCTTTTATTCACAAATCCAAAGAAACAAGGGAGGTTTAGTAGTAAAAATGGATGCAGCAAAATAAAAGCTGTGTCTGTGAGTGAAGAAGAAGCAAATATTATAGAAAGGGAATCAGTAAAAGTACAAGCCACAGTAACTGTTACACCAACAGTTGCAGGGTTTTTCTCAGAAATGGCTATAGAAAGAGGACTTGATGACATAACTGATTTGTTTGGTAAATCCATTCTCTTGGAGCTTTGTAGCTCTCAGCTAGATCCTGATACATCATTGCAGAAGAAAAAAATCAAAGGTTATGTTCACTTGACAACTCGATCAGCAAAAGAGATCAAGTATGAAGCTGAATTTGATGTACCAAATAGTTTTGGAGATATTGGTGCTGTTCTTGTGGAAAATGAGCATAGAAGGGAAATGTTTATAAAGCAAATTGTTCTTGATGGATTTCTCACTGGTCCTGTTAATTTTTCTTGTGATTCTTGGGTTCATTCCAAGTTTGACAACCCTAACAAAAGGGTCATTTTCTCCAACAAGTCATATTTGCCATCTGAAACACCAGAAGGATTGAAAAGGTTTAGAGAGGATGAACTGATAAATTTACGAGGCAAAGGACAAGGTGAACGCAAGACCTTTGATCGAATATACGATTACGATGTGTACAATGACCTTGGAGATATAGACAAAAATCCCGACCACAAGAGACCTGTTCTCGGTGGCAAACTACATCCATATCCTAGGCGTTGTAGAACCGGAAGACCTCGTAGCAAGACAGATCCGTTGTACGAGAAAACAAGTAGCAGTGTCTACGTTCCTAGGGACGAATCATTCTCGCAAGTAAAACAACTCACATTTTCAGTAAACACCTTACAATCGGCTTTCCACGCGCTTCTACCAGCTTTGAGAACAGCTGCAATTGACACAAATCTTGGATTTCCTGTTTTCTCATCCATAGATGACCTTTTCAATGAAGGATTTGACTTGCCTCCTCACAATGAGAAAGGTCTTAGGGCTGTGTTGCCAAGGTTGATCAAATTTGTCCAGGATGCTGGCAACGACATTCTTCGTTTCGAGACTCCTGCCACCATGGACAAGGACAGATTCTTTTGGTTTATGGATGAAGAATTTGGAAGACAGACTATAGCAGGTCTTAATCCTTGTTGCATCCAATTGGTCACGGAATGGCCATTGAAAAGCAAACTTGACCCTAAAATTTATGGTCCTGCGGAATCAGCAATAACCACTGAACTAGTTGAGCAACAAATCAGAGGATTCACTACTGTTCAAGAGGCAATAAAACAGAAGAAGTTGTTCGTCTTGGACTACTATGATTTTTTCTTGCCATTAGTAGAGGAAGTTAGAAAACTTGAAGGCACAACATTGTATGGATCAAGGACATTATTCTTCCTGCACGACGGCACATTGAGACCGCTAGCGATTGAGCTAGCCCGGCCGCCGATTGGTGATAAGCCACTATGGAGGGAAGTTTACAGACCTTGTTGGCATTCAACTGGCGTTTGGCTTTGGAGACTTGCTAAAGCTCATGTCCTTGCTCATGACTCTGGCTACCACCAACTTGTTAGTCACTGGCTGAGAACTCATTGTGCTACAGAACCATACATCATAGCAACAAACAGGCAACTAAGTGCAATGCATCCAATCTACAAACTATTACTTCCACATTTTAGATACACAATGGAAATCAATGCACTTGCACGTGAAGCACTAGTAAATGCAGATGGAATAATTGAAAGTAGCTTCACTCCCAAGAAACATTCTCTCTTAGTAAGTTCAATAGCCTATGACAAACATTGGCAATTTGACTTACAAGCCCTTCCAAATGACCTCATTCATAGAGGATTGGCAGTAAAAGACCCAAATGCCCCTCATGGCTTAAAACTAACCATAGAAGATTACCCTTATGCAAATGATGGTCTTGTTCTTTGGGATGCTTTAAAATCTTGGATCACTGATTATGTAAACATTTACTATAAAGAATCAAGAAATGTTGAGTCAGATAAAGAAATACAAGCTTGGTGGGATGAGATTAGAAATGTTGGTCATGGCGACAAGAAAGACGCACCATGGTGGCCTAATTTGAAAACAAATGAAGATCTTATTGAAATATTGACGACCATTGTTTGGATAACATCAGGGCATCATGCCGCGGTGAATTTTGGTCAGTACACTTATGCCGGATATTTTCCCAATAGACCGGCCATTGCGAGAAACAAAATGCCTACAGAAGACCCTACAGACAACGAGTGGGAACTTTTCTTCGAGAAACCAGAAGTGACTTTGTTGAAGACTTTTCCTTCGCAAATTCAAGCTATGACGGTGATGACCGTGTTAGATATTTTGTCTAGTCATTCGCCCGACGAGGAATATCTTGGACAAACGATTGAGCCGGCTTGGGAAGAGGAACCGTTGGTTAAAGCTTCTTTTGAGAAGTTTAAAGGGAAGTTGATGGAGCTTGAAGGTATAATTGATGAGAGGAATGCTGATGCCAAGTTGAGGAATAGGAATGGTGCTGGGATTTTGCCTTATGAGCTTTTGAAGCCAACTTCTGATGAGCCTGGTGTGACAGGAAAAGGTGTTCCATATAGTATCTCTATTTGA 2718 0.404 MLMQQINLKPNCLILQKPCLNGIGNNQPCFKVGSSRLLFTNPKKQGRFSSKNGCSKIKAVSVSEEEANIIERESVKVQATVTVTPTVAGFFSEMAIERGLDDITDLFGKSILLELCSSQLDPDTSLQKKKIKGYVHLTTRSAKEIKYEAEFDVPNSFGDIGAVLVENEHRREMFIKQIVLDGFLTGPVNFSCDSWVHSKFDNPNKRVIFSNKSYLPSETPEGLKRFREDELINLRGKGQGERKTFDRIYDYDVYNDLGDIDKNPDHKRPVLGGKLHPYPRRCRTGRPRSKTDPLYEKTSSSVYVPRDESFSQVKQLTFSVNTLQSAFHALLPALRTAAIDTNLGFPVFSSIDDLFNEGFDLPPHNEKGLRAVLPRLIKFVQDAGNDILRFETPATMDKDRFFWFMDEEFGRQTIAGLNPCCIQLVTEWPLKSKLDPKIYGPAESAITTELVEQQIRGFTTVQEAIKQKKLFVLDYYDFFLPLVEEVRKLEGTTLYGSRTLFFLHDGTLRPLAIELARPPIGDKPLWREVYRPCWHSTGVWLWRLAKAHVLAHDSGYHQLVSHWLRTHCATEPYIIATNRQLSAMHPIYKLLLPHFRYTMEINALAREALVNADGIIESSFTPKKHSLLVSSIAYDKHWQFDLQALPNDLIHRGLAVKDPNAPHGLKLTIEDYPYANDGLVLWDALKSWITDYVNIYYKESRNVESDKEIQAWWDEIRNVGHGDKKDAPWWPNLKTNEDLIEILTTIVWITSGHHAAVNFGQYTYAGYFPNRPAIARNKMPTEDPTDNEWELFFEKPEVTLLKTFPSQIQAMTVMTVLDILSSHSPDEEYLGQTIEPAWEEEPLVKASFEKFKGKLMELEGIIDERNADAKLRNRNGAGILPYELLKPTSDEPGVTGKGVPYSISI* 906
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g2170 905 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 213 905 IPR013819 GO:0016702|GO:0046872
Tpr3g2170 905 PANTHER LIPOXYGENASE 22 903 IPR000907 GO:0016702|GO:0046872
Tpr3g2170 905 ProSiteProfiles PLAT domain profile. 90 210 IPR001024 GO:0005515
Tpr3g2170 905 Gene3D - 537 904 - -
Tpr3g2170 905 Pfam Lipoxygenase 222 887 IPR013819 GO:0016702|GO:0046872
Tpr3g2170 905 Gene3D - 314 400 IPR027433 -
Tpr3g2170 905 ProSitePatterns Lipoxygenases iron-binding region signature 1. 557 571 IPR020833 GO:0016702|GO:0046872
Tpr3g2170 905 Gene3D PLAT/LH2 domain 49 214 - -
Tpr3g2170 905 ProSitePatterns Lipoxygenases iron-binding region signature 2. 584 594 IPR020834 GO:0016702|GO:0046872
Tpr3g2170 905 SUPERFAMILY Lipoxigenase 215 905 IPR036226 -
Tpr3g2170 905 Pfam PLAT/LH2 domain 144 209 IPR001024 GO:0005515
Tpr3g2170 905 CDD PLAT_LH2 75 211 IPR042057 -
Tpr3g2170 905 PANTHER LIPOXYGENASE 22 903 - -
Tpr3g2170 905 PRINTS Lipoxygenase signature 539 556 IPR013819 GO:0016702|GO:0046872
Tpr3g2170 905 PRINTS Lipoxygenase signature 557 574 IPR013819 GO:0016702|GO:0046872
Tpr3g2170 905 PRINTS Lipoxygenase signature 577 597 IPR013819 GO:0016702|GO:0046872
Tpr3g2170 905 PRINTS Plant lipoxygenase signature 180 198 IPR001246 GO:0016491
Tpr3g2170 905 PRINTS Plant lipoxygenase signature 206 227 IPR001246 GO:0016491
Tpr3g2170 905 PRINTS Plant lipoxygenase signature 245 261 IPR001246 GO:0016491
Tpr3g2170 905 PRINTS Plant lipoxygenase signature 277 296 IPR001246 GO:0016491
Tpr3g2170 905 PRINTS Plant lipoxygenase signature 342 363 IPR001246 GO:0016491
Tpr3g2170 905 PRINTS Plant lipoxygenase signature 388 404 IPR001246 GO:0016491
Tpr3g2170 905 PRINTS Plant lipoxygenase signature 427 446 IPR001246 GO:0016491
Tpr3g2170 905 PRINTS Plant lipoxygenase signature 494 518 IPR001246 GO:0016491
Tpr3g2170 905 PRINTS Plant lipoxygenase signature 817 831 IPR001246 GO:0016491
Tpr3g2170 905 SMART LH2_4 75 211 IPR001024 GO:0005515
Tpr3g2170 905 Gene3D - 402 533 - -
Tpr3g2170 905 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 75 214 IPR036392 GO:0005515
Tpr3g2170 905 Gene3D - 215 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g2170 Tpr-Chr3 20054977 20065173 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g2170 153 905 Acyl Lipid Metabolism Gene Families AT3G45140 57.520 0.0 917
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g2170 K00454 - gmx:100787202 1381.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g2170 3 20054977 20065173 Tpr3g2170 3 20054977 20065173 ECH