Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g2162 ATGGATAAATACTTAGTGCGTCAAAAGCACTTAAAAGAAAGGGTTAAGCCTCGTCGTAGGTTCAGTTGGAAGAGAAGTTTAGTTGAAGTTAATGGAAAATTTGAGCTGAATTATCGTCATGAGATGATGAATTTGCTTATGCGTTCTTATTCTGAGGTTGGAGTTTTTCCGCACTTGTATCGAACAGAAAATGGGGCGTTTTGTCACTCCAATATTAATCGAATTCTTAGTGAGGCAAGTGGGGAACGGCTTCCTCCGTTAAGAAGAAGGAAAGGTGTATCCTCTGTAGACTTTGACAACAAGGGAATATACCTGGCGTCTGTCACAAAAGCAGGTTGCTTAACGGTTCATGACTTTGAAGCTCTTTATTGCCAGGCAAACAAATTAACTCGTGTGCAGGAAGATGAAAGCAAACTTCTACTGCATCTCTCACCTGATCAACAACTTGATGTTGTCAAATGGAATCCTCTTAACCAGAATGAGGTTCTTTGTGGATCTTTGAAACGTAATGGACTACTCATATTTGATGTTGCATATATGATGTCAGAACCAATTGAAGAGTTACGTACTAGACATACCGCCACAGTTAATGGATCCAACATTCCCAAAGGTCTAACTGATGTTGCTTTTGCGTCAAATGAATCAAGGATATTTGGTTCTGATACGCATGGTACAATTAATGTTTGGGATAGAAGAGCGAAGACTCTACCTTGCCTCGAACTAACATCTGCTTCATTTGGTACCCTTAACAGCATCCAATTAGATGCAGATAATCAGATTATTTTTGGTGCTGGGAGACATGGGATTGTGTATGTGTGGGATATTCGTGGTGGAAGAGCAACTTCTACATTCCTAAGTCACAAAGAGATTTGCCATCCACCTGTAACATCAGTGAAGTTGGCAACATTACTAGAGAAGATTGGATCCTTGAAGGCACAAGCAGAAATTGTTTCCAAGGAGATCCACTCTATTGGCCTTAATCCTTCGTGTCCAAATCAGTTAGCATTCCATCTAGATGATGGCTGGTCGGGCATTTTGGATATTAACAATTTTCAGGTTACACATATTCATTGTCCACCCCCAGCTTGGTTAAATGATTCCTATGTTTCTCAAGATCAAATGGATTTAAGAAAACCTACATGGTTATCAACATGTTCGATCTATTTGGCAGGGTCACCGTTTGATCACGGCCTTCATATGTTAGATTTCTACCCGAGTATCAGCTCACCGAGTCACGTGGATTACAAGGAGGATATACAAGAATTTACCGGTCCAACCAAACAAAAGAATCACAATAGATTCATTCATTTACCTGAAGAAGTTTTGTCATGTGCTGCTCATCCTTTGTACAATGCCATCGTAGCGGGAACAAAGGAAACGTCTTTGCTTGTGATTTCCCAAAAACGTAAGTCATGCAAAGGAGAAGATTAG 1431 0.4018 MDKYLVRQKHLKERVKPRRRFSWKRSLVEVNGKFELNYRHEMMNLLMRSYSEVGVFPHLYRTENGAFCHSNINRILSEASGERLPPLRRRKGVSSVDFDNKGIYLASVTKAGCLTVHDFEALYCQANKLTRVQEDESKLLLHLSPDQQLDVVKWNPLNQNEVLCGSLKRNGLLIFDVAYMMSEPIEELRTRHTATVNGSNIPKGLTDVAFASNESRIFGSDTHGTINVWDRRAKTLPCLELTSASFGTLNSIQLDADNQIIFGAGRHGIVYVWDIRGGRATSTFLSHKEICHPPVTSVKLATLLEKIGSLKAQAEIVSKEIHSIGLNPSCPNQLAFHLDDGWSGILDINNFQVTHIHCPPPAWLNDSYVSQDQMDLRKPTWLSTCSIYLAGSPFDHGLHMLDFYPSISSPSHVDYKEDIQEFTGPTKQKNHNRFIHLPEEVLSCAAHPLYNAIVAGTKETSLLVISQKRKSCKGED* 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g2162 476 PANTHER WD40 REPEAT PROTEIN 12, 37 1 475 - -
Tpr3g2162 476 Gene3D - 74 473 IPR015943 GO:0005515
Tpr3g2162 476 SUPERFAMILY WD40 repeat-like 81 462 IPR036322 GO:0005515
Tpr3g2162 476 SMART WD40_4 181 230 IPR001680 GO:0005515
Tpr3g2162 476 SMART WD40_4 235 274 IPR001680 GO:0005515
Tpr3g2162 476 SMART WD40_4 136 176 IPR001680 GO:0005515
Tpr3g2162 476 SMART WD40_4 80 118 IPR001680 GO:0005515
Tpr3g2162 476 ProSiteProfiles Trp-Asp (WD) repeats profile. 242 283 IPR001680 GO:0005515
Tpr3g2162 476 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 1 475 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g2162 Tpr-Chr3 19957886 19967909 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g2162 - - cam:101498313 838.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g2162 3 19957886 19967909 Tpr3g2162 3 19957886 19967909 ECH