Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g2132 ATGTTGAAGGTGGCAGTGCGGTGGAATTGGAGGCAACTCTATCCTCTCCCTGTAACTTGCATTACACACCAAAAACTACGCTCACGAAACCCTTATCTTCGTATTCCCAACTCGAAGCTCTTTTGTTCCGCTGCTCTTCAAACAACATCGTCTCTCAATGCCGAACTGGACCCATATCTCCGCTGTTCCATGCCACAAAAGCCACTCCGAGTTGCCGTTCTTATCAGCGGAGGCGTTGACAGCAGTGTTGCTCTGCGACTACTCCATGCGGCCGGTCATTCTTGTACTGCTTTCTACCTCAAGATATGGTTCCAAGAAGATTTTGAGAACTTCTGGTCGGAGTGCCCTTGGGAAGATGATTTAAAGTATGCTAAAGATGTTTGCAATCAGGTTGAAGTACCATTAGAAGTTGTTCATTTGACAGATGAATACTGGAAAAACGTGGTTTCTTACATCATTGAAGAGTATCGGTGTGGTCGAACTCCAAACCCGGATGTTCTTTGCAATACAAGAATAAAGTTTGGTGCATTTTTGGATGCAATTGGCGGTATGGGTTTTGACTATGTTGCCTCTGGGCATTATGCAAAGGTTATCCACCCATTTGCAGATAAGATGGATGGCCCTTCTATTCTTGAACTATCACAAGACACGGTAAAGGATCAAACTTACTTCTTATCACACCTATCTCAGTCCCAGCTGAAGCGACTTCTTTTTCCACTTGGTTCTATTCCCAAGGACGAAGTCCGAAGGCTTGCCACAAAATTTGATCTACCAAATAAGGATAGAAAGGATTCCCAGGGAATATGCTTTTTGGGCAAGATAAAATTCAGTGAATTTGTTGCAAGACATATTGGGGAGAAAGAAGGTATCATTCTGGAAGCCGAGACAGGAGATTTCCTGGGCAAGCATCGGGGCTTCTGGTTTTATACTATTGGTCAACGCCAGGGTCTACGGCTACCTGGAGGTCCATGGTATGTTGTTGAGAAGGATGTTAAAAACAATGTAGTTTTTGTGTCCAGAAACTACTTTTCCTTTGACAAAAGAAGGTGCATATTCCGTGTTGGCTCTTTAAAATGGCTTAGTGGGTTGCCCCCTAGCCAAACAAGTCAGCTTCGATGCAAGGTGAGACATGGTCCTGGGTTCTATGATTGTAACTTACAAATGGAACTTGAAGGAGATAATGTAATTGAATCTGCTGTTGTCCGCATATCTGAAGATGATCAAGGCCTAGCAGCTGGGCAGTTCACAGCCTTCTATGAGGGAAGAACATGCATTGGATCTGGTGTGATTTTGGAGTCCGGGGATGATCAAAGTTATCCTGTATGCGCAAAAGCTTTAGAAATTGCAAGAATGAAAGATAAATCAAAGATTGGGAATCCAGTTAAGATAAAAGTTAAACCAGATAACCCACAAGAAGTTTGTTGTTCCACATCATAG 1437 0.4322 MLKVAVRWNWRQLYPLPVTCITHQKLRSRNPYLRIPNSKLFCSAALQTTSSLNAELDPYLRCSMPQKPLRVAVLISGGVDSSVALRLLHAAGHSCTAFYLKIWFQEDFENFWSECPWEDDLKYAKDVCNQVEVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFLDAIGGMGFDYVASGHYAKVIHPFADKMDGPSILELSQDTVKDQTYFLSHLSQSQLKRLLFPLGSIPKDEVRRLATKFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEKEGIILEAETGDFLGKHRGFWFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYFSFDKRRCIFRVGSLKWLSGLPPSQTSQLRCKVRHGPGFYDCNLQMELEGDNVIESAVVRISEDDQGLAAGQFTAFYEGRTCIGSGVILESGDDQSYPVCAKALEIARMKDKSKIGNPVKIKVKPDNPQEVCCSTS* 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g2132 478 CDD tRNA_Me_trans 70 430 IPR004506 GO:0008033|GO:0016740
Tpr3g2132 478 Pfam tRNA methyl transferase HUP domain 70 273 - -
Tpr3g2132 478 Gene3D - 283 342 IPR023382 GO:0016783
Tpr3g2132 478 Gene3D Translation factors 351 439 - -
Tpr3g2132 478 TIGRFAM trmU: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 70 430 IPR004506 GO:0008033|GO:0016740
Tpr3g2132 478 Pfam tRNA methyl transferase PRC-barrel domain 278 340 IPR046884 -
Tpr3g2132 478 PANTHER - 56 467 - -
Tpr3g2132 478 PANTHER BNAA08G29550D PROTEIN 56 467 - -
Tpr3g2132 478 Gene3D HUPs 58 282 IPR014729 -
Tpr3g2132 478 Hamap tRNA-specific 2-thiouridylase MnmA [mnmA]. 69 431 IPR004506 GO:0008033|GO:0016740
Tpr3g2132 478 Pfam Aminomethyltransferase beta-barrel domain 352 430 IPR046885 -
Tpr3g2132 478 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 70 315 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g2132 K21027 - gmx:100785275 829.706
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g2132 3 19636126 19640001 Tpr3g2132 3 19636126 19640001 ECH