Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g2099 ATGCATACTCTGCTGAGAATTACAACTCCTCTCAGAATTCCCACCAAAAATGCCATCTTCAACCATCGATTTCTCCGATCAGAACCCGAATCCTACGCTAAACTCATCGAAATATACACTCATGATCGAGCATTGCACCAAGGAAAGAAGCTTCACGCGCTTCTAACAACCAACGGCTATGCACGTTTCAACCTCATCGCATCCAATCTCGTAGCCTTATATACATGCTGTGGCCAACTCTCTCTTGCACGAAAACTGTTTGATAAAATTCCTCAAACAAATGTTCGACGTTGGATTGCACTTATTGGGACATGTGCTCGCTGTGGCTTCTACGATCATGCTCTTGCTGTGTTTTCCGAGATGCAAACACTTCATGGCCAAAATCCCAACAATGTCTTTGTGATTCCTAGTGTTCTTAAAGCCTGTGGCCATGTTTGTGATCGAGTTTATGGAGAGCAAGTGCATTGTTTGATTTTGAAGTGTTCGTTTGAGATTGATTGTTTTGTTTCGAGTGGGTTGATTGTTATGTACTCTAAGTGTGGTAAAGTTGAGGATGCACGTAAGGTGTTTGATGGAATGTGTATGAAGGATTTGGTGTCCTTGAATGCCGTTGTTTCTGGGTATGCTCAACAAGGGCTTCCAAATGAGGCATTGGGTTTGGTTGAAAATATGAAGTTGATGGGTGGGAACCCAAATGTGGTGACATGGAATGCTTTGATATCTGGGTTTGCACAGAAATGTGACCGGGTGATGGTATCTAAGATTTTCAGGTTGATGATTGAAGATGGAGTTGAGCCTGATGTGGTGTCATGGACTTCTGTTATATCTGGTTTTGTGCAGAATTTTCAAAATGATGAAGCTTTTGATACGTTTAAGCAAATGTTGCATCATGGGTTCTGCCCAACTTCGGCTACTATCAGTGCACTTCTGCCAGCTTGTGCTACTGCAGCAAGAGTGAGGTCCGGGAAGGAGATTCATGGCTATGCTTTGGTGATTGGTGTGGAGGAAGATGTATATGTAAGGAGTGCTTTGGTTGACATGTATGCAAAATGTGGGTTCATTTCTGAAGCTAGGACACTGTTTTATAAGATACCGGATAAGAATACAGTGACGATGAACTCTATGATTTTTGGTTATGCGAATCATGGGTATTACGAAGAAGCTATTGAGCTCTTCAATCGGATGGAGATGGAAGGGGTAACCAAGCTAGATCATTTAACTTTCACAGCAGCTCTCACAGCATGTAGCCATGTTGGAGATATTGAACTTGGGCAGAGGCTGTTCAAGATTATGCAAGAGAAATACTCCATCGAGCCACGATTGGAGCATTATGCATGCATGGTGGATCTTTTGGGTCGGGCAGGGAAACTCGAGGAAGCATATGGCATAATCAAGACTATGCCGGTTAAACCTGATTTGTTTGTGTGGGGTGCATTATTGGCTGCTTGTAGAAATCATGGGCATGTGGAGCTGGCTGAAGTGGCTGCTAAGCATTTGTCAGAGTTAGAACCAGAGAGTGCTGGAAACCGTCTTCTATTGTCCAGCTTGTATGCCGATGCTGGAAAATGGGGAAAGGTTGAGCGGATCAAGAGAAGGATAAAGAAAGGAAAACTCAGGAAACTTCAAGGGTTGAGTTGGATAGATAATATATAA 1653 0.4307 MHTLLRITTPLRIPTKNAIFNHRFLRSEPESYAKLIEIYTHDRALHQGKKLHALLTTNGYARFNLIASNLVALYTCCGQLSLARKLFDKIPQTNVRRWIALIGTCARCGFYDHALAVFSEMQTLHGQNPNNVFVIPSVLKACGHVCDRVYGEQVHCLILKCSFEIDCFVSSGLIVMYSKCGKVEDARKVFDGMCMKDLVSLNAVVSGYAQQGLPNEALGLVENMKLMGGNPNVVTWNALISGFAQKCDRVMVSKIFRLMIEDGVEPDVVSWTSVISGFVQNFQNDEAFDTFKQMLHHGFCPTSATISALLPACATAARVRSGKEIHGYALVIGVEEDVYVRSALVDMYAKCGFISEARTLFYKIPDKNTVTMNSMIFGYANHGYYEEAIELFNRMEMEGVTKLDHLTFTAALTACSHVGDIELGQRLFKIMQEKYSIEPRLEHYACMVDLLGRAGKLEEAYGIIKTMPVKPDLFVWGALLAACRNHGHVELAEVAAKHLSELEPESAGNRLLLSSLYADAGKWGKVERIKRRIKKGKLRKLQGLSWIDNI* 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g2099 550 Pfam PPR repeat 98 122 IPR002885 -
Tpr3g2099 550 Pfam PPR repeat 444 468 IPR002885 -
Tpr3g2099 550 Gene3D Tetratricopeptide repeat domain 216 332 IPR011990 GO:0005515
Tpr3g2099 550 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 197 231 IPR002885 -
Tpr3g2099 550 Gene3D Tetratricopeptide repeat domain 14 155 IPR011990 GO:0005515
Tpr3g2099 550 Pfam PPR repeat family 367 416 IPR002885 -
Tpr3g2099 550 Pfam PPR repeat family 266 314 IPR002885 -
Tpr3g2099 550 Pfam PPR repeat family 196 244 IPR002885 -
Tpr3g2099 550 Gene3D Tetratricopeptide repeat domain 343 549 IPR011990 GO:0005515
Tpr3g2099 550 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 267 301 IPR002885 -
Tpr3g2099 550 Pfam E motif 486 548 IPR046848 -
Tpr3g2099 550 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 232 266 IPR002885 -
Tpr3g2099 550 PANTHER OS03G0271300 PROTEIN 26 194 - -
Tpr3g2099 550 PANTHER OS03G0271300 PROTEIN 196 244 - -
Tpr3g2099 550 PANTHER OS03G0271300 PROTEIN 244 549 - -
Tpr3g2099 550 TIGRFAM PPR: pentatricopeptide repeat domain 234 268 IPR002885 -
Tpr3g2099 550 TIGRFAM PPR: pentatricopeptide repeat domain 269 302 IPR002885 -
Tpr3g2099 550 TIGRFAM PPR: pentatricopeptide repeat domain 199 233 IPR002885 -
Tpr3g2099 550 TIGRFAM PPR: pentatricopeptide repeat domain 370 400 IPR002885 -
Tpr3g2099 550 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 368 402 IPR002885 -
Tpr3g2099 550 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 196 244 - -
Tpr3g2099 550 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 244 549 - -
Tpr3g2099 550 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 26 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g2099 Tpr-Chr3 19360328 19363649 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g2099 83 548 Glycoside Hydrolase AT3G49170 33.794 1.28e-83 276
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g2099 - - gmx:100790576 872.078
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g2099 3 19360328 19363649 Tpr3g2099 3 19360328 19363649 ECH