Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g2092 ATGATTTTTTCAAGAATTGGGCGTTCTCTATCGCGTTCTTCTCGCGTTAAAAATTTCTTGCACGGTGATTCGAGATTGGGAACGCTACTTTCTGGAGTTCCGCGAACAAATGTCTATTCTGAAGGAATTGAAGGGGGATTAGGGTTTTCCAAGAGTTATTTAACTTCTGCAATAGCTCGCAATAATGGTTTTGTTTCTAATAATTTGTCTGATTTTAAATCTATTGCCGCAAACCCTAGGTTTCTTCGTTTGTTTTCCAGTGAATCACCAAAGAAAAAGAATTATGAAAACTTTTATCCCAAGGAAAAGAAGGAAATTCCAAAGGGAGAAGAGAAAAAAAATGAGTCTAAAGAGGAGTCAAAGTCAAACACTGATGATCAAGGAAGTTTTCAAGAAGCTTTCATGAAACAATTTCAAAATTATCTCACCCCATTGTTGGTGATGGGGCTATTTCTTTCATCCTATTCTTTTGGTCCTCGTGAGCAGCAACAGATTAGCTTTCAGGAGTTCAAAAATAAGCTTTTGGAACCAGGATTAGTAGATCATATTGTTGTCTCCAACAAATCAGTTGCCAAAATATATGTGAGGAGCTCTCCCCGTGATCAAACTGACAGTGAAGTATTCCAAGGAAACCTTCCTGCAAAGGGATCTGGTGGTCAATATAAATATTCGATCAATATTGGAAGTGTCGAGTCTTTTGAGGAGAAATTAGAGGAAGTGCAAGAAGCCCTTGGTGTTGACCCTCATGATTTTGTACCTGTTACGTATTCTTCTGAAATGGTTTGGTACCAGGAGTTGATGAGGTTTGCTCCAACCCTGTTGCTTTTGGGAACTCTCTTTTTTATGGGAAGAAGAATGCAAGGTGGATTTGGTGTTGGTGGCGGCGCTGGTGGTAAGGGTGGTCGTTCATTATTTAACATCGGAAAAGTAACTGTTCATAAAGTAGACAAAAATGCCAAAAATAAGGTCTATTTTAAAGACGTTGCTGGTTGTGATGAGGCAAAAAATGAAATTATGGAGTTTGTGCACTTCCTCAAGAATCCTAAGAAGTATGAAGAGCTTGGTGCCAAAATTCCTAAAGGTGCTCTTCTGGTGGGTCCCCCAGGCACAGGAAAAACCCTTTTAGCAAAAGCAACTGCAGGGGAGTCTGGTGTGCCATTTCTTTCTATATCTGGTTCTGATTTCATGGAAATGTTTGTCGGTGTTGGACCGTCCAGGGTGAGAAACTTGTTTCAGGAAGCTAGGCAGTGCGCTCCCAGTATAGTATTTATTGATGAGATTGATGCAATTGGTCGGAAAAGGGGTCGTGGAGGTTTCTCTGGTTCAAATGATGAGCGTGAAAGTACTTTAAATCAATTGTTGGTGGAGATGGATGGTTTTGGAACTACTGCTGGAGTTGTTGTGCTAGCAGGTACAAATAGAGCTGATATATTAGACAATGCCCTACTTAGGCCTGGGCGTTTTGACCGCCAGATATCAATTGATATCCCCGACATCAAAGGTCGTGACCAGATATTTCAGATTTACTTGAAAAAGATCAAACTTGATCAAGAGCCTTCGTATTATTCACAAAGGCTTGCAGCCCTTACTCCAGGATTTGCTGGAGCAGACATTGCTAATGTTTGCAATGAAGCTGCTCTGATTGCTGCAAGGACTAATGAAGCACGAGTCACAATGAATCATTTTGAGGCGGCTGTTGATAGGATCATTGGTGGTTTGGAGAAGAAGAACAAGGTAATAAGTAAGAAGGAAAGGCGTACTGTTGCTTACCATGAAGCAGGTCATGCTGTTACAGGTTGGTTCTTGGAACATACTGATCCATTGTTGAAAGTAACCATTGTTCCTCGCGGAACAGCAGCTCTTGGGTTTGCCCAGTATGTTCCTAATGAGAATCTTCTCATGACAAAGGAGCAGCTTTTTGATATGACTTGTATGACCCTTGGTGGTCGGGCTGCTGAGAAGGTTCTCATCGGGACAATCTCTACAGGAGCACAAAATGACTTGGAGAAAGTGACGAAGATGACATATGCCCAAGTAGCTGTCTATGGTTTCAGCGATAAAGTGGGCCTCCTCTCTTTCCCTCAAAGAGAGGACTCGTTTGAGATGTCCAAACCATACAGCAGCAAAACTGGTGCAATCATTGATACTGAAGTCCGAGAATGGGTGAACAAAGCATATGAACATACCTTACAGCTTGTAGAGGAACATAAGGAGAAAATAGCTCAAATTGCAGAGTTGCTGCTAAAAAACGAAGTACTTCACCAAGAGGACTTGGTTCGAGTCTTGGGAGAGCGACCCTTCAAGAGTGCTGAACCTACTCATTATGATACATATAAGCTAGGGTTTCAAGATGAGAAGAAAGTTATAGAAACCACCGTCAATGAACCCGAGGATGATGGTGGGTCTTCACCTCTAGAACCTGCGGTTGTTCCCACATAG 2439 0.4182 MIFSRIGRSLSRSSRVKNFLHGDSRLGTLLSGVPRTNVYSEGIEGGLGFSKSYLTSAIARNNGFVSNNLSDFKSIAANPRFLRLFSSESPKKKNYENFYPKEKKEIPKGEEKKNESKEESKSNTDDQGSFQEAFMKQFQNYLTPLLVMGLFLSSYSFGPREQQQISFQEFKNKLLEPGLVDHIVVSNKSVAKIYVRSSPRDQTDSEVFQGNLPAKGSGGQYKYSINIGSVESFEEKLEEVQEALGVDPHDFVPVTYSSEMVWYQELMRFAPTLLLLGTLFFMGRRMQGGFGVGGGAGGKGGRSLFNIGKVTVHKVDKNAKNKVYFKDVAGCDEAKNEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEMFVGVGPSRVRNLFQEARQCAPSIVFIDEIDAIGRKRGRGGFSGSNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRADILDNALLRPGRFDRQISIDIPDIKGRDQIFQIYLKKIKLDQEPSYYSQRLAALTPGFAGADIANVCNEAALIAARTNEARVTMNHFEAAVDRIIGGLEKKNKVISKKERRTVAYHEAGHAVTGWFLEHTDPLLKVTIVPRGTAALGFAQYVPNENLLMTKEQLFDMTCMTLGGRAAEKVLIGTISTGAQNDLEKVTKMTYAQVAVYGFSDKVGLLSFPQREDSFEMSKPYSSKTGAIIDTEVREWVNKAYEHTLQLVEEHKEKIAQIAELLLKNEVLHQEDLVRVLGERPFKSAEPTHYDTYKLGFQDEKKVIETTVNEPEDDGGSSPLEPAVVPT* 813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g2092 812 SUPERFAMILY FtsH protease domain-like 579 769 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Tpr3g2092 812 CDD AAA 359 495 - -
Tpr3g2092 812 MobiDBLite consensus disorder prediction 96 127 - -
Tpr3g2092 812 ProSitePatterns AAA-protein family signature. 466 484 IPR003960 GO:0005524|GO:0016887
Tpr3g2092 812 SMART AAA_5 358 498 IPR003593 -
Tpr3g2092 812 MobiDBLite consensus disorder prediction 790 812 - -
Tpr3g2092 812 Pfam ATPase family associated with various cellular activities (AAA) 363 494 IPR003959 GO:0005524|GO:0016887
Tpr3g2092 812 Gene3D - 148 261 - -
Tpr3g2092 812 MobiDBLite consensus disorder prediction 96 125 - -
Tpr3g2092 812 TIGRFAM FtsH_fam: ATP-dependent metallopeptidase HflB 262 762 IPR005936 GO:0004176|GO:0004222|GO:0016020
Tpr3g2092 812 Gene3D - 497 581 - -
Tpr3g2092 812 Pfam FtsH Extracellular 145 249 IPR011546 GO:0004176|GO:0004222|GO:0005524|GO:0008270|GO:0016021
Tpr3g2092 812 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 322 569 IPR027417 -
Tpr3g2092 812 PANTHER ATP-DEPENDENT PROTEASE 29 811 - -
Tpr3g2092 812 Hamap ATP-dependent zinc metalloprotease FtsH [ftsH]. 17 800 IPR005936 GO:0004176|GO:0004222|GO:0016020
Tpr3g2092 812 Pfam Peptidase family M41 579 760 IPR000642 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Tpr3g2092 812 Gene3D Peptidase M41 582 770 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Tpr3g2092 812 Pfam AAA+ lid domain 525 564 IPR041569 -
Tpr3g2092 812 PANTHER ATP-DEPENDENT ZINC METALLOPROTEASE FTSH 10, MITOCHONDRIAL-LIKE 29 811 - -
Tpr3g2092 812 Gene3D - 306 495 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g2092 Tpr-Chr3 19282484 19288807 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g2092 1 812 Miscellaneous Gene Families AT2G29080 73.993 0.0 1154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g2092 K08956 - gmx:100806656 1257.66