Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g2069 ATGGGTCAAGGTCTTAGTTGCAGAGGTAGTCATGAACATGGTCTCTTTCGTGCTGTCCAACATGGTGACCTTCAAACTGTTTCTACTTTGTTAAAGACACATCCTTCTCTTATTCATCGTACTACTGTTTATGACCACCATTCTCCTCTTCATATTGCTGCTGCCAATGGTCAGATCCAGGTTTTATCTAGACTTTTAGATGGATCTGCAAATCCAGATGTGTTGAATCGCCAAAAGCAGACTCCACTTATGTTGGCAGCAATGCATGGGAAAATTGATTGTGTGGAAAAGCTACTTGAAGCTGGTGCTAATGTATTGATGTTTGATGTGTGTCATGGAAGAACCTGTTTGCATTATGCTGCTTATTATGGTCATTCTTCTTGTCTTAAAGCAATACTTTCTGCTGCTCAATCTAGTCCTGTGGCTGCTTCTTGGGGGTTTTCACGGTTTGTGAATATTAGAGATGGTAGGGGCGCTACACCGTTGCATTTGGCAGCTCGTCAAAGACGATCTGAATGCGTGCATACTTTGTTGTGTAGTGGAGCTCTTGTTTGTGCTTCAACTAGCAGATATGGCTGTCCCGGGAGCACTCCTCTTCATCTAGCTGCTAAAGGAGGTTCTCTAGATTGTATCCGTGAACTATTGGCATGGGGTGCAGATCGTCTTCAACGTGATGCATCTGGTCGGATACCGTATGTGGTTGCTCTGAAACACAAACACGGAGCATGTGCAGCACTGTTAAATATTGCATCTGCACAACCTCTTGTGTGGCCATCAGCTTTGAAGATAATCAGTGAGCTTAATCCGGAGGCCAAATTATTATTAGAACAGGCCTTGATGGACGCGAATAAGGAAAGGGAGAAAAATATATTGAAAGGCAGTCCTTACTCTCTTCCATCTCCAGCACACTCTGATCAGATGGATGACAATATCTCTGAGGTTAGTGAGACGGAATTATGCTGCATCTGCTTCGAGCAGGTGTGTACAATTGAAGTCCAGGACTGTGGCCACCAAATGTGTGCACAATGCACACTAACACTCTGTTGTCACAACAAGCCAAACACATCAACTTCTCATCCTACCCCACCCGTTTGTCCATTCTGTCGAAGCACCATATCTAAACTGATGGTTATCAAGATAGAAACTCACGAAGACATCTATCAAGACGGTACCACCGATACCACTTGTTTTAAGCCAAGCAAGTCAAGAAAATTCCGTAACATGAACGAGGGTAGCAGCAGCAGTTTCAAGGGACTATCTAATGTAAATTCATTCGGAAAAATGAGCGGCCGTAGTTCCGGTATGATTGCTTCCGAAAATGAATGTATTGATGATAAGCCACAATGA 1347 0.4358 MGQGLSCRGSHEHGLFRAVQHGDLQTVSTLLKTHPSLIHRTTVYDHHSPLHIAAANGQIQVLSRLLDGSANPDVLNRQKQTPLMLAAMHGKIDCVEKLLEAGANVLMFDVCHGRTCLHYAAYYGHSSCLKAILSAAQSSPVAASWGFSRFVNIRDGRGATPLHLAARQRRSECVHTLLCSGALVCASTSRYGCPGSTPLHLAAKGGSLDCIRELLAWGADRLQRDASGRIPYVVALKHKHGACAALLNIASAQPLVWPSALKIISELNPEAKLLLEQALMDANKEREKNILKGSPYSLPSPAHSDQMDDNISEVSETELCCICFEQVCTIEVQDCGHQMCAQCTLTLCCHNKPNTSTSHPTPPVCPFCRSTISKLMVIKIETHEDIYQDGTTDTTCFKPSKSRKFRNMNEGSSSSFKGLSNVNSFGKMSGRSSGMIASENECIDDKPQ* 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g2069 448 ProSiteProfiles Ankyrin repeat region circular profile. 45 77 - -
Tpr3g2069 448 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 302 390 IPR013083 -
Tpr3g2069 448 ProSiteProfiles Ankyrin repeat profile. 78 110 IPR002110 GO:0005515
Tpr3g2069 448 SUPERFAMILY Ankyrin repeat 15 247 IPR036770 -
Tpr3g2069 448 Pfam Ankyrin repeats (many copies) 195 232 IPR002110 GO:0005515
Tpr3g2069 448 Gene3D - 198 252 IPR036770 -
Tpr3g2069 448 Gene3D - 9 145 IPR036770 -
Tpr3g2069 448 ProSiteProfiles Ankyrin repeat region circular profile. 78 105 - -
Tpr3g2069 448 ProSiteProfiles Ankyrin repeat profile. 45 77 IPR002110 GO:0005515
Tpr3g2069 448 Pfam Ankyrin repeats (3 copies) 15 109 IPR002110 GO:0005515
Tpr3g2069 448 Pfam Ankyrin repeats (3 copies) 112 182 IPR002110 GO:0005515
Tpr3g2069 448 ProSiteProfiles Ankyrin repeat profile. 194 226 IPR002110 GO:0005515
Tpr3g2069 448 ProSiteProfiles Ankyrin repeat region circular profile. 157 182 - -
Tpr3g2069 448 ProSiteProfiles Ankyrin repeat profile. 157 189 IPR002110 GO:0005515
Tpr3g2069 448 ProSiteProfiles Zinc finger RING-type profile. 320 369 IPR001841 -
Tpr3g2069 448 Gene3D - 146 197 IPR036770 -
Tpr3g2069 448 ProSiteProfiles Ankyrin repeat region circular profile. 194 220 - -
Tpr3g2069 448 MobiDBLite consensus disorder prediction 429 448 - -
Tpr3g2069 448 PANTHER UBIQUITIN-PROTEIN LIGASE XBAT31, PUTATIVE-RELATED 1 439 - -
Tpr3g2069 448 SMART ANK_2a 45 74 IPR002110 GO:0005515
Tpr3g2069 448 SMART ANK_2a 194 223 IPR002110 GO:0005515
Tpr3g2069 448 SMART ANK_2a 112 142 IPR002110 GO:0005515
Tpr3g2069 448 SMART ANK_2a 78 107 IPR002110 GO:0005515
Tpr3g2069 448 SMART ANK_2a 10 40 IPR002110 GO:0005515
Tpr3g2069 448 SMART ANK_2a 157 186 IPR002110 GO:0005515
Tpr3g2069 448 PANTHER HOMEOBOX PROTEIN WARIAI 1 439 - -
Tpr3g2069 448 SUPERFAMILY RING/U-box 319 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g2069 Tpr-Chr3 19038770 19042560 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g2069 12 285 Miscellaneous Gene Families AT5G60070 28.826 1.85e-18 85.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g2069 - - gmx:100800611 789.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g2069 3 19038770 19042560 Tpr3g2069 3 19038770 19042560 ECH
Tpr7g4479 7 53510142 53513581 Tpr3g2069 3 19038770 19042560 PCT