Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g2052 ATGGCACCAAAGGGAGAGAAGAAGCCAGCGGAGAAGAAACCCGCAGAGGAGAAGAAGTCGACCGTAGCAGAGAAGGCTCCCGCTGAGAAGAAGCCAAAGGCAGGAAAGAAGCTGCCAAAGGACGGTGGTTCAGCCGCAGCAGGAGAGAAGAAGAAGAAGAGAAATAAGAAGAGCGTAGAAACATACAAGATCTACATCTTCAAAGTTCTGAAACAAGTTCACCCTGACATTGGTATCTCAAGCAAAGCCATGGGTATAATGAACAGTTTCATAAATGATATATTCGAGAAACTCGCACAAGAATCATCAAGACTTGCAAGGTACAACAAGAAGCCAACAATCACTTCTAGGGAAATTCAGACTGCTGTTAGACTTGTTCTTCCCGGTGAATTGGCTAAGCATGCTGTTTCTGAGGGTACCAAAGCTGTTACTAAGTTCACAAGAGAGAAGAAGCCAGCGGAGAAGAAACCCGCAGAGGAGAAGAAGTCCACCGTAGCAGAGAAGGCTCCCGCTGAGAAGAAGCCAAAGGCTGGAAAGAAGCTGCCAAAGGACGGTGGTTCAGCGGCAGCAGGAGAGAAGAAGAAGAAGAGAAACAAGAAGAGCGTAGAAACATACAAGATCTACATCTTCAAAGTTCTGAAACAAGTTCACCCTGACATTGGTATCTCAAGTAAAGCAATGGGAATAATGAACAGTTTCATAAATGATATATTTGAGAAACTCGCACAAGAATCATCAAGACTTGCAAGGTACAACAAGAAGCCAACAATCACTTCTAGGGAAATTCAAACTGCTGTTAGACTTGTTCTTCCCGGTGAATTGGCTAAGCATGCTGTTTCTGAAGGAACCAAAGCTGTTACCAAGTTCACAAGTTCTTAG 879 0.4425 MAPKGEKKPAEKKPAEEKKSTVAEKAPAEKKPKAGKKLPKDGGSAAAGEKKKKRNKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTREKKPAEKKPAEEKKSTVAEKAPAEKKPKAGKKLPKDGGSAAAGEKKKKRNKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS* 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g2052 292 SUPERFAMILY Histone-fold 177 292 IPR009072 GO:0046982
Tpr3g2052 292 Pfam Core histone H2A/H2B/H3/H4 150 268 IPR007125 GO:0003677
Tpr3g2052 292 Pfam Core histone H2A/H2B/H3/H4 1 125 IPR007125 GO:0003677
Tpr3g2052 292 PRINTS Histone H2B signature 62 80 IPR000558 GO:0000786|GO:0003677|GO:0030527
Tpr3g2052 292 PRINTS Histone H2B signature 81 101 IPR000558 GO:0000786|GO:0003677|GO:0030527
Tpr3g2052 292 PRINTS Histone H2B signature 103 120 IPR000558 GO:0000786|GO:0003677|GO:0030527
Tpr3g2052 292 PRINTS Histone H2B signature 120 133 IPR000558 GO:0000786|GO:0003677|GO:0030527
Tpr3g2052 292 PRINTS Histone H2B signature 133 146 IPR000558 GO:0000786|GO:0003677|GO:0030527
Tpr3g2052 292 MobiDBLite consensus disorder prediction 141 197 - -
Tpr3g2052 292 PANTHER HISTONE H2B 149 292 IPR000558 GO:0000786|GO:0003677|GO:0030527
Tpr3g2052 292 PANTHER HISTONE H2B 5 148 IPR000558 GO:0000786|GO:0003677|GO:0030527
Tpr3g2052 292 ProSitePatterns Histone H2B signature. 260 282 IPR000558 GO:0000786|GO:0003677|GO:0030527
Tpr3g2052 292 PANTHER HISTONE H2B.1-RELATED 149 292 - -
Tpr3g2052 292 PANTHER HISTONE H2B.1-RELATED 5 148 - -
Tpr3g2052 292 Gene3D Histone, subunit A 150 292 IPR009072 GO:0046982
Tpr3g2052 292 Gene3D Histone, subunit A 21 149 IPR009072 GO:0046982
Tpr3g2052 292 ProSitePatterns Histone H2B signature. 117 139 IPR000558 GO:0000786|GO:0003677|GO:0030527
Tpr3g2052 292 SUPERFAMILY Histone-fold 34 149 IPR009072 GO:0046982
Tpr3g2052 292 MobiDBLite consensus disorder prediction 1 54 - -
Tpr3g2052 292 MobiDBLite consensus disorder prediction 143 197 - -
Tpr3g2052 292 SMART h2b3 195 291 IPR000558 GO:0000786|GO:0003677|GO:0030527
Tpr3g2052 292 SMART h2b3 52 148 IPR000558 GO:0000786|GO:0003677|GO:0030527
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g2052 Tpr-Chr3 18812546 18817525 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g2052 K11252 - gmx:100776374 443.736