Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g2018 ATGGATATTGATCTTACTCCTCAATTGGCGAAGCAAGTGTATGGTGGCAATGGCGGATCGTATCACGCTTGGTCTCCTTCTGAACTCCCTATGTTGCGTGAAGGTAACATTGGTGCTGCCAAATTAGCTCTTGAGAAGAATGGTTTCGCTATTCCTCGTTACTCTGATTCTTCTAAAGTTGCTTATGTTCTTCAAGGAAGTGGAGTTGCTGGAATTGTACTACCTGAATCAGAAGAGAAGGTTGTTGCAATTAAGACTGGTGATGCTTTAGCACTCCCCTTTGGTGTTGTGACATGGTGGTACAACAAAGAGGACACTGAGTTGGTTGTTTTGTTCCTCGGCGATACTTCAAAGGCACACAAGGCTGGTGAGTTTACTGATTTTTTCCTGACTGGTTCTAATGGAATCTTTACCGGATTTTCAACTGAGTTTGTCGGAAGGGCTTGGGACTTGGACGAGAACAATGTCAAGACCCTTGTCGGAAAACAATCTGGTAAAGGGATTGTGAAGCTTGAAGGAAACATTACCCTTCCTCAGCCTAAAGAGGAACACAAGAAGGGTATGGCCTTGAATTGTCTAGAGGCACCATTGGATGTTGATATTAAGAATGGTGGAAGGGTTGTTGTCTTGAACACTAAGAACCTTCCTTTGGTTGGTGAGGTTGGTTTAGGAGCTGATCTGGTGAGGCTTGATGGAAAAGCCATGTGCTCTCCTGGATTCTCTTGTGATTCTGCTTTGCAGGTTACTTACATTGTTAGAGGGAGCGGCCGTGTTCAGGTTGTTGGTGTTGATGGTAAGAGAGTTTTGGAGACAACTTTGAAGGCTGGAAATTTGTTCATTGTGCCCAGGTTTTTCGTTGTCTCTAAGATTGCCAATGATGAAGGAATGGAGTGGTTTTCTATCATCACTACCCCTAATCCTATATTTACACACATGGCTGGAAGTTCTTCAGTGTGGAAGGCATTATCACCCACAGTTTTGCAGGCTGCTTTCAATGTTGATGCAGATGTTGAGAAACACTTCCGTTCAAAGAGGACTGCTGATGCCATTTTCTTCCCTCCTCCAAATTAA 1071 0.4379 MDIDLTPQLAKQVYGGNGGSYHAWSPSELPMLREGNIGAAKLALEKNGFAIPRYSDSSKVAYVLQGSGVAGIVLPESEEKVVAIKTGDALALPFGVVTWWYNKEDTELVVLFLGDTSKAHKAGEFTDFFLTGSNGIFTGFSTEFVGRAWDLDENNVKTLVGKQSGKGIVKLEGNITLPQPKEEHKKGMALNCLEAPLDVDIKNGGRVVVLNTKNLPLVGEVGLGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRVQVVGVDGKRVLETTLKAGNLFIVPRFFVVSKIANDEGMEWFSIITTPNPIFTHMAGSSSVWKALSPTVLQAAFNVDADVEKHFRSKRTADAIFFPPPN* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g2018 356 CDD cupin_11S_legumin_N 4 173 - -
Tpr3g2018 356 PRINTS 11-S seed storage protein family signature 211 231 IPR006044 GO:0045735
Tpr3g2018 356 PRINTS 11-S seed storage protein family signature 258 274 IPR006044 GO:0045735
Tpr3g2018 356 PRINTS 11-S seed storage protein family signature 276 291 IPR006044 GO:0045735
Tpr3g2018 356 PRINTS 11-S seed storage protein family signature 294 312 IPR006044 GO:0045735
Tpr3g2018 356 PRINTS 11-S seed storage protein family signature 316 333 IPR006044 GO:0045735
Tpr3g2018 356 CDD cupin_11S_legumin_C 198 353 - -
Tpr3g2018 356 PANTHER OS03G0336100 PROTEIN-RELATED 2 347 - -
Tpr3g2018 356 PANTHER - 2 347 - -
Tpr3g2018 356 Pfam Cupin 196 337 IPR006045 -
Tpr3g2018 356 Pfam Cupin 11 157 IPR006045 -
Tpr3g2018 356 Gene3D Jelly Rolls 196 356 IPR014710 -
Tpr3g2018 356 SUPERFAMILY RmlC-like cupins 16 345 IPR011051 -
Tpr3g2018 356 SMART Cupin_1_3 195 339 IPR006045 -
Tpr3g2018 356 SMART Cupin_1_3 3 157 IPR006045 -
Tpr3g2018 356 Gene3D Jelly Rolls 3 195 IPR014710 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g2018 Tpr-Chr3 18400847 18403603 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g2018 35 351 Miscellaneous Gene Families AT2G18540 21.798 5.25e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g2018 - - gmx:100782055 638.647
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g2018 3 18400847 18403603 Tpr3g2018 3 18400847 18403603 ECH