Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g2014 ATGATGTATCAAAGAGCAAAATCTATTAATAATCGGAATCTATTGTCCCCTAATTATTACTATTATTACTACAATACTAATTACAATGAAAAAGCTTTATTCCACACCCACACACAACAACCTCAAAACCAAAAACCAAAATCAAACCTTCGAAATCGAAAACACATTCCATTCATAACCGAAATCAAACATGTTCAAACCTCAGAACAAGCTTTGTCTCTGTTTCATCATTACAAAGAACTCGGTTTCAAACACTATTACCCTTCATATGCTGCATTACTCTACAAACTCGCACGTTCTAGAAACTTCGAAGCCGTCGAAAAAATCCTCACACACATGAAAGAAACCAATGTTCAATGTAATGAAACCCTTTTCATTGCTCTGTTTCAACATTATGGTCCTGTAAAAGCCATTGAACTCTTTCACACAATGCCACAGTTCAACTGTGTTCGTACTTTACAGTCTTTTAATTCGCTTCTTAATCTTCTTATTGATCATTGTATGTTTTGTGAGGCTAATGATGCTTTTGATCGATCCTATGAAATGGGTTTTCGTCCGAATACTGTTACGTTTAATATTATGATAAAGTGTTGGTTGGTGAAAGGTGAATGGGGAAAAGCATGTGAGGTGTTTGATGAAATGCTTCAGAAGAAAGTGCAACCTAGTGTTGTTACTTATAATAGTCTTATTGGGTTTTTGTCTAGAAAAGGTGATTTGGATAAAGCGATGATGTTGGTTGATGATATGAGACGTAAAGGAAAACGTGCGAATGGAGTGACGTATGCGCTTTTGATGGAGGGTTTGTGTTCTGTGGGGAAGTATGAGGAAGCTAAGAAGTTAATGTTTGATATGGCGTATCGTGGATGTAAACCTCAGCTTGTGAATTTTTCTGTTTTGATGAATGATCTTGGAAAGAGGGGTAAGATTGATGAGGCGATGGTTTTATTCCGTGAGATGAGAAAGAGGCGGCTTAAGCCGGATGTTGTGACGTACAATGTATTTGTGAATTATCTTTGCAAGGAAGGTAAGACGGCGGAAGCTTACAAAATGTTGGTTGAGATGCAGATTGGTGGTTGCGAGCCAAATGCAGCTACATATAGGATGATGCTTGATGGTTTGTGTCGGAATGGGGATTTTGAGGGAGGGTTGAATGTTTTGAATGCAATGATGGCTAGTAGGCATTGTCCGCGACCCGATACGTTTAATTGTCTGGTTGTTGGGTTATTGAAGTCTGGGAATATTGATGGTGGATGCTTTGTTTTGGAAGAGATGGTGAAGAGAAAGGTAGATTTTGAATTGGAGAGCTGGGAAGCAGTGATAAAATATGCTTGCAGTGAGGATGATAATGGTGGCAGTAGGCTTAGGATTATACTTGCATCTCAGTCCATCTAA 1392 0.3843 MMYQRAKSINNRNLLSPNYYYYYYNTNYNEKALFHTHTQQPQNQKPKSNLRNRKHIPFITEIKHVQTSEQALSLFHHYKELGFKHYYPSYAALLYKLARSRNFEAVEKILTHMKETNVQCNETLFIALFQHYGPVKAIELFHTMPQFNCVRTLQSFNSLLNLLIDHCMFCEANDAFDRSYEMGFRPNTVTFNIMIKCWLVKGEWGKACEVFDEMLQKKVQPSVVTYNSLIGFLSRKGDLDKAMMLVDDMRRKGKRANGVTYALLMEGLCSVGKYEEAKKLMFDMAYRGCKPQLVNFSVLMNDLGKRGKIDEAMVLFREMRKRRLKPDVVTYNVFVNYLCKEGKTAEAYKMLVEMQIGGCEPNAATYRMMLDGLCRNGDFEGGLNVLNAMMASRHCPRPDTFNCLVVGLLKSGNIDGGCFVLEEMVKRKVDFELESWEAVIKYACSEDDNGGSRLRIILASQSI* 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g2014 463 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 222 256 IPR002885 -
Tpr3g2014 463 Pfam PPR repeat 400 428 IPR002885 -
Tpr3g2014 463 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 12 454 - -
Tpr3g2014 463 Pfam PPR repeat family 186 230 IPR002885 -
Tpr3g2014 463 Pfam PPR repeat family 326 375 IPR002885 -
Tpr3g2014 463 Gene3D Tetratricopeptide repeat domain 284 354 IPR011990 GO:0005515
Tpr3g2014 463 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 327 361 IPR002885 -
Tpr3g2014 463 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 187 221 IPR002885 -
Tpr3g2014 463 SUPERFAMILY TPR-like 55 348 IPR011990 GO:0005515
Tpr3g2014 463 Pfam Pentatricopeptide repeat domain 73 133 IPR002885 -
Tpr3g2014 463 Pfam Pentatricopeptide repeat domain 245 306 IPR002885 -
Tpr3g2014 463 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 292 326 IPR002885 -
Tpr3g2014 463 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 257 291 IPR002885 -
Tpr3g2014 463 Gene3D Tetratricopeptide repeat domain 63 133 IPR011990 GO:0005515
Tpr3g2014 463 PANTHER OS05G0548600 PROTEIN 12 454 - -
Tpr3g2014 463 Gene3D Tetratricopeptide repeat domain 134 283 IPR011990 GO:0005515
Tpr3g2014 463 Gene3D Tetratricopeptide repeat domain 355 457 IPR011990 GO:0005515
Tpr3g2014 463 TIGRFAM PPR: pentatricopeptide repeat domain 259 291 IPR002885 -
Tpr3g2014 463 TIGRFAM PPR: pentatricopeptide repeat domain 224 253 IPR002885 -
Tpr3g2014 463 TIGRFAM PPR: pentatricopeptide repeat domain 400 429 IPR002885 -
Tpr3g2014 463 TIGRFAM PPR: pentatricopeptide repeat domain 329 363 IPR002885 -
Tpr3g2014 463 TIGRFAM PPR: pentatricopeptide repeat domain 189 222 IPR002885 -
Tpr3g2014 463 TIGRFAM PPR: pentatricopeptide repeat domain 365 396 IPR002885 -
Tpr3g2014 463 TIGRFAM PPR: pentatricopeptide repeat domain 296 328 IPR002885 -
Tpr3g2014 463 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 362 396 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g2014 Tpr-Chr3 18361247 18362886 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g2014 156 448 Glycosyltransferase AT1G05670 24.832 1.26e-23 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g2014 - - gmx:100776556 647.891