Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g1023 ATGCAGTTATTGTCATGGCTAAACACATGCTCCACCTCCAACTCCGCCACCACCACCCACAACTCAACCATTTCACTCCCAATACCAAAACATGCATCAGACACTTCTTCTTCATCTTCTCCAAACTTAACCTCTGATGATAGCACCTCAACTCTTTACACCAACTACTCCATACAAACACTCCCATCCATTCCATCTCTTCAGAAACTCACTCTCTCTCCACAAAATCTCAACAACTTCTCTATCTCATACACATGCCTAACCTCCCTAACACCCCACCCTTCTCGCCCAATCACCTCCCTGGCCATCCACAACAACCTCCTCTACGCTGCAACTGAAAACCAAATCAACGTCTACGATCGTCACACGTGTAACAATCTCCACACGTTCAACTCCAATTCAACTTCCTCCGGCTCCACCAAAACCATCACGTTCTCGAACGAAATGGTCTTCACCACTCACCAAGATTGCAAGATCCGAGTCTGGCAAAAACCAAAACCACAAAACAACAACCACCGCAAGTTAACCGTTCTTCCAACCGTCAACGATCGTCTCCGTCGTTTTCTTCTCCCGAAAAACTACGTAACAATCCGTCGCCATAACAAACGTCTCTGGATTGAACACGCCGACGCCGTAACCGATCTCGCTGTTTCTAACGGCGTTATCTACTCCGTTTCGTGGGATAAAACATTAAAAATATGGAGTATCTCTGATCTTCGTTGCGTTGAATCCGTTAAAGCTCATGAAGACGCGGTTAACGCGGTTGCAGTTTCTAACGATGGAACAGTTTACACTGGATCATCCGATAAACGAATTCGGGTTTGGGCGAAACCCGTTGGAGAAAAACGACACGTGTTAGTTGCGACTTTGGAAAAGCATAAATCAGCGGTTAATGCTTTAGCATTAAACGACGACGGTTCGGTGTTATTTTCGGGTGCTTGTGACCGTTCGATATTGGTATGGGAACGAGAGGATAGTGCAAATCATATGGTTGTGAGTGGGGCTTTAAGGGGGCATCAGAAAGCGATACTTTGTTTGATCAACGTCTCTGATTTGTTACTTAGTGGATCAGCTGATCGGACGGTTAGGATTTGGAAGCGTGATTATGATGGATCGTTTTGTTGTGTTGGTGTTCTTGATGGTCATAGAAAACCTGTGAAGTGTTTGGCGGCAATTAGTAAGTATGATGAAGAAAGTCAAAGTTCATCTAACGGCGTCGTTTCTGTTTTTAGTGGTTCTTTAGACGGTGAGATAAAGGTTTGGCAACTTTCTATTGGGTGTTTGGCCACTCAGGATCAAAATATTTTGAATTTGTAG 1317 0.4457 MQLLSWLNTCSTSNSATTTHNSTISLPIPKHASDTSSSSSPNLTSDDSTSTLYTNYSIQTLPSIPSLQKLTLSPQNLNNFSISYTCLTSLTPHPSRPITSLAIHNNLLYAATENQINVYDRHTCNNLHTFNSNSTSSGSTKTITFSNEMVFTTHQDCKIRVWQKPKPQNNNHRKLTVLPTVNDRLRRFLLPKNYVTIRRHNKRLWIEHADAVTDLAVSNGVIYSVSWDKTLKIWSISDLRCVESVKAHEDAVNAVAVSNDGTVYTGSSDKRIRVWAKPVGEKRHVLVATLEKHKSAVNALALNDDGSVLFSGACDRSILVWEREDSANHMVVSGALRGHQKAILCLINVSDLLLSGSADRTVRIWKRDYDGSFCCVGVLDGHRKPVKCLAAISKYDEESQSSSNGVVSVFSGSLDGEIKVWQLSIGCLATQDQNILNL* 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g1023 438 SMART WD40_4 123 163 IPR001680 GO:0005515
Tpr3g1023 438 SMART WD40_4 83 120 IPR001680 GO:0005515
Tpr3g1023 438 SMART WD40_4 329 366 IPR001680 GO:0005515
Tpr3g1023 438 SMART WD40_4 372 422 IPR001680 GO:0005515
Tpr3g1023 438 SMART WD40_4 198 235 IPR001680 GO:0005515
Tpr3g1023 438 SMART WD40_4 283 322 IPR001680 GO:0005515
Tpr3g1023 438 SMART WD40_4 238 276 IPR001680 GO:0005515
Tpr3g1023 438 CDD WD40 86 422 - -
Tpr3g1023 438 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 18 426 IPR045182 -
Tpr3g1023 438 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 336 366 - -
Tpr3g1023 438 ProSiteProfiles Trp-Asp (WD) repeats profile. 205 244 IPR001680 GO:0005515
Tpr3g1023 438 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 245 275 - -
Tpr3g1023 438 ProSiteProfiles Trp-Asp (WD) repeats profile. 290 331 IPR001680 GO:0005515
Tpr3g1023 438 Gene3D - 73 188 IPR015943 GO:0005515
Tpr3g1023 438 PANTHER F21J9.19 18 426 - -
Tpr3g1023 438 Gene3D - 281 436 IPR015943 GO:0005515
Tpr3g1023 438 Gene3D - 196 280 IPR015943 GO:0005515
Tpr3g1023 438 ProSiteProfiles Trp-Asp (WD) repeats profile. 245 275 IPR001680 GO:0005515
Tpr3g1023 438 MobiDBLite consensus disorder prediction 21 46 - -
Tpr3g1023 438 ProSiteProfiles Trp-Asp (WD) repeats profile. 336 366 IPR001680 GO:0005515
Tpr3g1023 438 PRINTS G protein beta WD-40 repeat signature 222 236 IPR020472 -
Tpr3g1023 438 PRINTS G protein beta WD-40 repeat signature 353 367 IPR020472 -
Tpr3g1023 438 PRINTS G protein beta WD-40 repeat signature 409 423 IPR020472 -
Tpr3g1023 438 SUPERFAMILY WD40 repeat-like 82 424 IPR036322 GO:0005515
Tpr3g1023 438 Pfam WD domain, G-beta repeat 374 421 IPR001680 GO:0005515
Tpr3g1023 438 Pfam WD domain, G-beta repeat 335 366 IPR001680 GO:0005515
Tpr3g1023 438 Pfam WD domain, G-beta repeat 287 321 IPR001680 GO:0005515
Tpr3g1023 438 Pfam WD domain, G-beta repeat 240 275 IPR001680 GO:0005515
Tpr3g1023 438 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 290 322 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g1023 Tpr-Chr3 9324619 9326628 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g1023 239 422 Acyl Lipid Metabolism Gene Families AT3G18860 26.842 1.54e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g1023 - - gmx:100817776 588.571
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g1023 3 9324619 9326628 Tpr3g1023 3 9324619 9326628 ECH