Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g1020 ATGATCACATTCACATCATATCATAAAATAATAAAAGAAACACAAAAAATAGCTATGTGGCGGTGCATGTTGATTTTCATCAATATTATATTGATCGGAGCAACCATATTGGAAGTGAAACCAGTGGTTGCGGTGGTGAACGGTGTTCCACTTAAAACAAGTTCAAGATGGATTGTGAATAAAAATGGAGAAAGGGTAAAATTGGCATGTTTAAATTGGGTTTCACATTTAGATGCTGTTGTAGCTGAAGGGCTTAGTAAAAAGCCCGTGGGTGTTATATCTTCTGGAATAAAGTCCATGGGCTTTAACTGTGTTAGGCTTACTTGGCCTATTCTTCTTGTAACTAATGAGACTCTTTCTTCTCTTACGGTTAGAGAATCATTTCAGAATCTTGGTCTACTTGAATCTATTTCTGGTTTTCAATCCAATAATCCTTCTATTATTGATCTTTCCCTCATTCAAGCTTTTCAGGCAGTTGTGAAAAGTCTTGGGGACAACAATGTGATGGTGATTTTGGACAACCATATAACCCAACCAGGGTGGTGCTGTAGTGGTTCCGACGGTAATGGGTTCTTTGGCGACCAATATTTCGACCCAAATTTGTGGACCACAGGCCTCACCAAAATGGCCACTCTTTTCAAAGGAGTGACCAATGTGGTGGGAATGAGCTTGAGAAATGAACTCCGAGGTCCAAAACAGAATGTAGACGATTGGTACAGGTATATGGTGCAAGGAGCAGAAGCTGTTCATGCAGCAAATCCAGATGTTCTTGTAATTTTATCTGGATTAAATTTTGACAAAGACTTATCCTTCCTTGCGAAAAGACCAGTGAGCCTAACATTCACTGGAAAACTAGTGTTTGAGGCACATTGGTATGGCTTCACTGATGGTGAAGCTTGGGTGTCAGGTAACCCAAATCAAGTATGTGGACAAGTGGCTGGAAATATGAAGAGAATGTCTGGCTATTTGGTTGATCAAGGATGGCCATTGTTTGTGAGTGAGTTTGGGGTGGACTTGAGGGGTACTAATGTCAATGATAACCGTTATCTTAACTGTTTTATAGCATATGCAGCTGAGCTTGATTTGGATTGGGCATTGTGGACATTGGTTGGTAGTTACTATTTTAGACAAGGGGTTATAGGAATGGAAGAGTTTTATGGGATTATCAATTGGGATTGGTCACAAGTTAGAAATGCTAGTTTCTTGCATAGGATTGCTTCCCTTCAACTTCCATTTCGAGGTCCAGGCATAACAATAGGCAATCCACACAAACTGATTTTCCATCCTTTAACCGGTCTTTGCGTGATAAGAAAGTCACTACTAGAGCCACTAGAATTAGGTCCATGCTCTCTTTCTGATGGCTGGAACTACACACCACAGAAGACATTATCAATAAAGGGTACATACTATTGCATACAAGCACAAAAAGAAGGGATGCCTGCAACACTTAGCATACTATGCTCAAATCCTAACTCTCAATGGGACATGATCTCAGACTCCAAATTGCACCTTTCATCAAAAACTAGCAGTGGATCAACAGATGTTTGTTTAGATGTGAACGAAAAGAACGCCATTGTGACCAATGCGTGTAAATGCTTGAGCAACGATAAATCATGCGACCCTGCAAGCCAGTGGTTTAAACTTATTGATAGCGGTAGGAGGTCAAGTTCGTCAACCTCGACATTATCTGAGCTAAATTTATTGGAGATTTTCATGACACCATTGAACTCAAAATAA 1737 0.4007 MITFTSYHKIIKETQKIAMWRCMLIFINIILIGATILEVKPVVAVVNGVPLKTSSRWIVNKNGERVKLACLNWVSHLDAVVAEGLSKKPVGVISSGIKSMGFNCVRLTWPILLVTNETLSSLTVRESFQNLGLLESISGFQSNNPSIIDLSLIQAFQAVVKSLGDNNVMVILDNHITQPGWCCSGSDGNGFFGDQYFDPNLWTTGLTKMATLFKGVTNVVGMSLRNELRGPKQNVDDWYRYMVQGAEAVHAANPDVLVILSGLNFDKDLSFLAKRPVSLTFTGKLVFEAHWYGFTDGEAWVSGNPNQVCGQVAGNMKRMSGYLVDQGWPLFVSEFGVDLRGTNVNDNRYLNCFIAYAAELDLDWALWTLVGSYYFRQGVIGMEEFYGIINWDWSQVRNASFLHRIASLQLPFRGPGITIGNPHKLIFHPLTGLCVIRKSLLEPLELGPCSLSDGWNYTPQKTLSIKGTYYCIQAQKEGMPATLSILCSNPNSQWDMISDSKLHLSSKTSSGSTDVCLDVNEKNAIVTNACKCLSNDKSCDPASQWFKLIDSGRRSSSSTSTLSELNLLEIFMTPLNSK* 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g1020 578 CDD RICIN 424 548 IPR000772 -
Tpr3g1020 578 PANTHER GLYCOSIDE HYDROLASE FAMILY 5 PROTEIN 28 564 - -
Tpr3g1020 578 Gene3D Glycosidases 49 408 - -
Tpr3g1020 578 SUPERFAMILY Ricin B-like lectins 421 548 IPR035992 -
Tpr3g1020 578 Pfam Cellulase (glycosyl hydrolase family 5) 95 369 IPR001547 GO:0004553|GO:0071704
Tpr3g1020 578 PANTHER CELLULASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_5G14560) 28 564 - -
Tpr3g1020 578 SUPERFAMILY (Trans)glycosidases 50 398 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g1020 Tpr-Chr3 9312640 9316478 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g1020 50 558 Glycoside Hydrolase AT1G13130 60.429 0.0 651
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g1020 - - gmx:100790415 903.279
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g1020 3 9312640 9316478 Tpr3g1020 3 9312640 9316478 ECH