LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tpr3g1019	ATGCCTCTAGAGTTGGATACTTTTTTAGCTTTGGTTATAGTTTTGGGTTTCTTTGCATTGATTCAAGCATTAATGGGAAGTAAGAATTCAAAAGAATCTCAAAGGAGACATGTAGTTTCACCATCATCAGCAGCATCATCATCATCATATGGGTCTGTTGATTCTTCATCTTCTTCATGGGAAAATAACTTTGGATATCCACAATCAACATATCCATATCCACAACCACAACAAAATCCATATCAAAGACATAATCACCACCGCGCTACACAACACGATTATTCGCGGCCAAATAGGAAGTTAGATAGGAGATATTCAAGGATAGCTGATGATTATCATTCTCTTGATGAGGTTACTACTGCTCTTTCACATGCTGGCTTGGAATCTTCTAATCTCATTGTTGGGATTGATTTCACAAAGAGCAATGAATGGACAGGGAAGAGGTCATTCAATCGAAAAAGTTTACATCACATCGGAAATGGTCAAAATCCTTACGAACAAGCAATCGCAATTATTGGGAAAACATTAAGCACTTTTGATGAGGATAACATGATTCCTTGTTTTGGATTTGGAGATGCATCAACACATGATCAAGATGTCTTCAGTTTCCATCCAGATGAGAGGTGTTGCAATGGATTTGAGGAAGTTTTGTCAAAATATAGAGAGATTGTTCCATGCCTCCGACTCGCAGGACCCACCTCATTTGCCCCTATTATTGAGATGGCCATGACTATTGTCGAGAAAAGTGGTGGCCAATATCATGTCTTGCTTATAATCGCTGATGGACAGGTGACAAGAAGTGTTGACACACAGCATGGCAAGCTAAGTTCACAGGAAAAGAAGACAATTGATGCAATTGTAAAAGCTAGGTATGTTCTTCTTTGGTTTCTCTCATCTAATAACTATTTTGGATTCTTATACTCGTTAAATTGCAGCGAGTATCCACTGTCGATAGTTTTGGTTGGAGTTGGAGATGGACCATGGGATATGATGAGGGAATTTGACGATAACATTCCAGCTCGAGCCTTTGACAATTTTCAGTTTGTGAATTTTACGGAGATAATGTCAAAGAAAGTGGATTCGAACCGAAAAGAGACAGAGTTTGCTCTAGCAGCTTTGATGGAGATACCTTCTCAATATAAGGCAACCATAGATCACAGCCTATTGGGGACACGGAGGGGATACTCACCAGATAGGGTTCCTTTACCTCCACCACAATATGATAGGTCTTCTTCTAGCAATGCCGCAACATCTTTTCGTTCAAACAGTTTTCAGCAAAGTACTCATACTCATGCGATCAACAGCAATGAAATGAACTCACAAAGTACTCCTCATACTTATGCGAGCAACGAGAATGGAATGAACTCGGAACCATCTTCAAGTGGTTTATATGACAATAAGATTTGTCCAATTTGTCTTACTAATGGGAAGGATATGGCCTTCGGTTGCGGGCATCAGACTTGTTGCGAATGTGGAGACAGTCTTGAATTCTGCCCTATTTGCCGGAGCACAATCGATACGAGAATAAAGCTTTATTAA	1539	0.3977	MPLELDTFLALVIVLGFFALIQALMGSKNSKESQRRHVVSPSSAASSSSYGSVDSSSSSWENNFGYPQSTYPYPQPQQNPYQRHNHHRATQHDYSRPNRKLDRRYSRIADDYHSLDEVTTALSHAGLESSNLIVGIDFTKSNEWTGKRSFNRKSLHHIGNGQNPYEQAIAIIGKTLSTFDEDNMIPCFGFGDASTHDQDVFSFHPDERCCNGFEEVLSKYREIVPCLRLAGPTSFAPIIEMAMTIVEKSGGQYHVLLIIADGQVTRSVDTQHGKLSSQEKKTIDAIVKARYVLLWFLSSNNYFGFLYSLNCSEYPLSIVLVGVGDGPWDMMREFDDNIPARAFDNFQFVNFTEIMSKKVDSNRKETEFALAALMEIPSQYKATIDHSLLGTRRGYSPDRVPLPPPQYDRSSSSNAATSFRSNSFQQSTHTHAINSNEMNSQSTPHTYASNENGMNSEPSSSGLYDNKICPICLTNGKDMAFGCGHQTCCECGDSLEFCPICRSTIDTRIKLY*	513

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tpr3g1019	512	MobiDBLite	consensus disorder prediction	405	428	-	-
	Tpr3g1019	512	MobiDBLite	consensus disorder prediction	36	52	-	-
	Tpr3g1019	512	MobiDBLite	consensus disorder prediction	86	101	-	-
	Tpr3g1019	512	MobiDBLite	consensus disorder prediction	30	52	-	-
	Tpr3g1019	512	ProSiteProfiles	Zinc finger RING-type profile.	469	502	IPR001841	-
	Tpr3g1019	512	SUPERFAMILY	RING/U-box	463	508	-	-
	Tpr3g1019	512	Pfam	Copine	310	389	IPR010734	-
	Tpr3g1019	512	Pfam	Copine	154	289	IPR010734	-
	Tpr3g1019	512	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	445	512	IPR013083	-
	Tpr3g1019	512	MobiDBLite	consensus disorder prediction	78	101	-	-
	Tpr3g1019	512	PANTHER	RING-FINGER PROTEIN	310	512	-	-
	Tpr3g1019	512	PANTHER	RING-FINGER PROTEIN	25	290	-	-
	Tpr3g1019	512	Pfam	Zinc finger, C3HC4 type (RING finger)	466	507	-	-
	Tpr3g1019	512	MobiDBLite	consensus disorder prediction	406	428	-	-
	Tpr3g1019	512	SMART	VWA_4	129	338	IPR002035	-
	Tpr3g1019	512	PANTHER	COPINE FAMILY PROTEIN 1	310	512	-	-
	Tpr3g1019	512	PANTHER	COPINE FAMILY PROTEIN 1	25	290	-	-
	Tpr3g1019	512	CDD	RING-HC_RGLG_plant	469	512	IPR045317	GO:0061630\|GO:0070534

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tpr3g1019	Tpr-Chr3	9306654	9310795	Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tpr3g1019	K16280		-	gmx:100800161	683.33

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Tpr3g1019	3	9306654	9310795	Tpr3g1019	3	9306654	9310795	ECH