Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g1016 ATGTATCACAGTGTCGGTGCACGGCGCCTATTATACCGTTCTCAAATATCTTACTACGTTAAAGCTGGTCTCATTGACACTGCAATCCAAGTGTTCGACGAAATGTCTCAATCAAATTGTCGTCCTTTCAGCATCGATTACAATCGTTTCATCGGCGTTCTCCTCCGTAACTCTCATCTCGACCTTGCCCATAACTACTACCACCGCCACGTCATCCCCAATGGTTTCTCTCTCACACCTTTCACTTACTCACGTTTCATTTCCGCTCTTTGTTCCGTCAAAAACTTCTCTTTGATCGAGTCTCTGCTTCGTGATATGGATGCTCTTGGCTATGTTCCTGATATTTGGGCTTTCAATATTTATCTCAACGTTCTCTGCCGCGAAAATCGGTTAGAAGCGGCTCTTGAGTTTTTTCGCACAATGCCTTTGAAGGGAAGAGAGCCTGATGTTGTTAGTTATACTATTATCATTGATGCATTGTGTAAAGCGAAAAGGTTTGACGAGGTTGCTCGTGTTTGGCGTGGTTTGATTGGGTCTGGGTTGAAGCCTGATGTAAAGGCTTGTGGTGCAGTTGTTGTTGGGTTGTGTAGTGCTGGTAAAGTTGATTTGAGTTATGAGCTTGTTATTGATGTGATCAATGGCGGGGTTAAGGTTAATTGTTTGGTTTATAATGCTTTGATTAGTGGGTTTTGTAAGATGGGTAGGAATGGGATTAAAAAGGCGATGGTGATTAAGGGGTTTATGAGTAAGAATGGGTGTGTGCCGGATTTGGTTACTTATAATATTTTGTTGAATTATTCTTGTGATGAGATTATGCTTGATGAGGCTGTGAAGTTGGTGGAGACGATGGAGAGGAGTGGTGTGGAGCCTGATTTGTATAGTTATAATCAGTTGCTCAAGGGTTTTTGTAAGGCTAATCAGGTGGATAGGGCTTATTTGACTATGGTCAAGAAGATGCAGAGTAAAGGGTTATGCGATGTTGTTTCTTACAATACTATTATTTCGGCTTTTTGTAAGGCGCGGAACACCGAGCGAGCTTACAAATTGTTTGAGGAAATGCATAGGAAAGGGATTCAACCGGACGTGATAACGTTCACTGTACTCATAGAAGCGTTTTTTAGGGAAGATGGTTCTGGTACTGATGTTGCCAAGAAGCTTCTTGATCAAATGACAGCGATGGGGATTGTTCCTGACGTAATATTCTATACCACAATATTTGATCATCTGTGCAAGTCCGGGAATATGGATAGGGCTGTTGGTGTTTTTTGTGACATGGTGGAGAATGGAGTAAGTCCAGATGTGGTCTCATACAATGCACTCATAAATGGGTTTTGCAAGGCTTCTAGAGTTATGGATGCTATGCGTCTATATGAAGAAATGCAGGTTAAAGGATTATTTCCGGATGAGGTCACTTTCAAGTTGATAGTTGGAGGGCTCATTAAGGGAAACAAAATTTCAGAGGCATGTAGGGTCTGGGATCAGATGATGGAAAAAGGCTTTACACTTGACAGACATCTCTCTGAGATTCTAGTCAATGCCATTCAGTCAAGAGATGGCACATGA 1563 0.4197 MYHSVGARRLLYRSQISYYVKAGLIDTAIQVFDEMSQSNCRPFSIDYNRFIGVLLRNSHLDLAHNYYHRHVIPNGFSLTPFTYSRFISALCSVKNFSLIESLLRDMDALGYVPDIWAFNIYLNVLCRENRLEAALEFFRTMPLKGREPDVVSYTIIIDALCKAKRFDEVARVWRGLIGSGLKPDVKACGAVVVGLCSAGKVDLSYELVIDVINGGVKVNCLVYNALISGFCKMGRNGIKKAMVIKGFMSKNGCVPDLVTYNILLNYSCDEIMLDEAVKLVETMERSGVEPDLYSYNQLLKGFCKANQVDRAYLTMVKKMQSKGLCDVVSYNTIISAFCKARNTERAYKLFEEMHRKGIQPDVITFTVLIEAFFREDGSGTDVAKKLLDQMTAMGIVPDVIFYTTIFDHLCKSGNMDRAVGVFCDMVENGVSPDVVSYNALINGFCKASRVMDAMRLYEEMQVKGLFPDEVTFKLIVGGLIKGNKISEACRVWDQMMEKGFTLDRHLSEILVNAIQSRDGT* 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g1016 520 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 291 322 IPR002885 -
Tpr3g1016 520 Pfam PPR repeat 222 235 IPR002885 -
Tpr3g1016 520 Pfam PPR repeat 470 500 IPR002885 -
Tpr3g1016 520 Pfam PPR repeat 16 40 IPR002885 -
Tpr3g1016 520 Pfam PPR repeat 81 110 IPR002885 -
Tpr3g1016 520 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 468 502 IPR002885 -
Tpr3g1016 520 PANTHER MEMBRANE-ASSOCIATED SALT-INDUCIBLE PROTEIN-LIKE 2 519 - -
Tpr3g1016 520 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 256 290 IPR002885 -
Tpr3g1016 520 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 149 183 IPR002885 -
Tpr3g1016 520 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 361 397 IPR002885 -
Tpr3g1016 520 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 433 467 IPR002885 -
Tpr3g1016 520 TIGRFAM PPR: pentatricopeptide repeat domain 435 469 IPR002885 -
Tpr3g1016 520 TIGRFAM PPR: pentatricopeptide repeat domain 151 185 IPR002885 -
Tpr3g1016 520 TIGRFAM PPR: pentatricopeptide repeat domain 81 115 IPR002885 -
Tpr3g1016 520 TIGRFAM PPR: pentatricopeptide repeat domain 402 434 IPR002885 -
Tpr3g1016 520 TIGRFAM PPR: pentatricopeptide repeat domain 222 256 IPR002885 -
Tpr3g1016 520 TIGRFAM PPR: pentatricopeptide repeat domain 328 362 IPR002885 -
Tpr3g1016 520 TIGRFAM PPR: pentatricopeptide repeat domain 470 503 IPR002885 -
Tpr3g1016 520 TIGRFAM PPR: pentatricopeptide repeat domain 293 324 IPR002885 -
Tpr3g1016 520 TIGRFAM PPR: pentatricopeptide repeat domain 258 291 IPR002885 -
Tpr3g1016 520 TIGRFAM PPR: pentatricopeptide repeat domain 16 42 IPR002885 -
Tpr3g1016 520 TIGRFAM PPR: pentatricopeptide repeat domain 117 150 IPR002885 -
Tpr3g1016 520 Gene3D Tetratricopeptide repeat domain 70 210 IPR011990 GO:0005515
Tpr3g1016 520 Gene3D Tetratricopeptide repeat domain 211 375 IPR011990 GO:0005515
Tpr3g1016 520 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 79 113 IPR002885 -
Tpr3g1016 520 Gene3D Tetratricopeptide repeat domain 7 69 IPR011990 GO:0005515
Tpr3g1016 520 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 8 42 IPR002885 -
Tpr3g1016 520 PANTHER MEMBRANE-ASSOCIATED SALT-INDUCIBLE PROTEIN-LIKE 2 519 - -
Tpr3g1016 520 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 398 432 IPR002885 -
Tpr3g1016 520 Pfam PPR repeat family 113 162 IPR002885 -
Tpr3g1016 520 Pfam PPR repeat family 326 373 IPR002885 -
Tpr3g1016 520 Pfam PPR repeat family 255 304 IPR002885 -
Tpr3g1016 520 Pfam PPR repeat family 397 446 IPR002885 -
Tpr3g1016 520 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 219 255 IPR002885 -
Tpr3g1016 520 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 326 360 IPR002885 -
Tpr3g1016 520 Gene3D Tetratricopeptide repeat domain 376 519 IPR011990 GO:0005515
Tpr3g1016 520 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 114 148 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g1016 203 514 Glycosyltransferase AT1G05670 30.351 4.49e-38 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g1016 - - aprc:113872581 797.734
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g1016 3 9276510 9279459 Tpr3g1016 3 9276510 9279459 ECH