Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g1012 ATGGAGTGTTCCACATTATGCCTAATCTCTTTCTTGCTTCTTTTTGGTTCCTGCTTTCAGAGTGTATCATCACATAATTCATCTCAGAGTGACCAACAACAAGCTAACTTGCCACCAAGAGGTTGGAATTCCTATGATTCATTTTCCTGGATAATTTCTGAACAAGTATTCTTACAGAATGCTGAACAAATCGCTCAGCGTCTCCGTGTTCATGGATACGAGTATGCTGTGGTGGATTGGCTCTGGTATAGGAAGAAAGTCCCCGGCGCTAATAGTAATTCTCTTGGATTCGACTTGATTGATGAATGGGGAAGGATGGTCCCTGATCCAGAAAGGTGGCCTTCTTCCAGTGGTGGGAAGGGATTCACTGAAGTTGCTAACAAAGTACATAGTTTAGGTTTAAAGTTTGGGATTCATGTTATGAGAGGAATAAGCACACAGGCTGTGAATGCAAACACACCTATTTTAGATACAATAAAGGGTGGTGCTTATGAAGAAGCCGGTCGAGTATGGCATGCAAAAGACATAGCAATCCCAACAAGGACTTGTGCATGGATGTCTAATGGTTTCATGAGTGTAAATACAACATTAGGAGCAGGAAGAGCTTTTCTCAGATCCCTTTATGAGCAGTATGCTGCTTGGGGACTTGATCTTGTGAAACATGATTGTGTGTTTGGTACTGACTTGGATTTAAACGAGATAACTTATGTATCTGAGGTTCTCAGCCAGGTTAATCGCTCCTTAGTGTATTCTATATCTCCCGGAACCAGCGTGACACCAGCCTTGGCCAAGGAGGTAAGCGGACTAGTCAACATGTATCGCATAACAGGAGATGATTGGGATTCATGGGGGGATGTCAAGTCTCACTTTAATATATCAAGGGATTTATCTGCAGCTAATATGATAGGAGCAAAAGGTTTTAAGGGAAAGTCATGGCCTGATTTGGACATGCTACCGTTTGGATGGCTAACTGATCCAGGTGCCAATGATGGTCCTCACAGGGGCAGTAAACTGACTCTAGTAGAGAAAAGGACACAGATGACTTTATGGGCTTTTGCAAAGTCACCGCTTATGTATGGAGGCGATGTACGGGAGATTGATTCTGCTACCTACGACATTATCACAAATCCTACTTTGCTAGAGATTAATCATTTCAGCTCAAACAATATGGAGTTTCCTTATAATCCAAGCTTGAAGAAGCGTCATAAAGGGAAACCGAAAAGATCTAAGAAAGGAAAGAAGCCTACACTTTCATTAGGCCTTACTAGCTGCACTGAATCAGAGGCAAGTGGTTGGATTGTTGAAAATCTTAACCAACCTCTTGAAAGAATCTGTTGGAAAGGAAGTTTAGAAAACAATCCGAACCCTTTCTGCGTACAAAAGAGAGAACTTCAGCAGCACACATTAGACGGAGAGAGTAAGTATCAAGAGGAATTTCGCGGGAAACATCAATTTTTTGCAGCAAATCAAATGAGATTTTGCTTGGATGGTTCTTCAAAACAAAAAACTACCTCCCAAGAGATTCAGAGAGTCTCATTTTCTCCTTGCAAAATGCATTCAAATCAGATTTGGGAGCTAACACCCAATGGGACCCTGCTAAATAGTTACAATGGTCTTTGTGCAACAGTAAATTATATTGAAGAGAATGTTGATTCGAATGAGGTTCGATCATGGATTGCGACGGGAAGAAATGGAGAAGTGTATATGTCATTCTTCAATCTAAGTGATCAACAGAATACAACAATTACAATATATGCGAAAACATCATTTGTGTCTAATGTTTTAACTGACAAACGTATCAATTCATGTCAAGGTAAGGAAGTGTGGAGTGGAAAGGACGTTGTAACAACGCAAGGGGTAATAAAAATGGATGTTGAAGCTCATGGATGTGCACTTTTTGTTCTTAATTGCAAATAG 1917 0.4069 MECSTLCLISFLLLFGSCFQSVSSHNSSQSDQQQANLPPRGWNSYDSFSWIISEQVFLQNAEQIAQRLRVHGYEYAVVDWLWYRKKVPGANSNSLGFDLIDEWGRMVPDPERWPSSSGGKGFTEVANKVHSLGLKFGIHVMRGISTQAVNANTPILDTIKGGAYEEAGRVWHAKDIAIPTRTCAWMSNGFMSVNTTLGAGRAFLRSLYEQYAAWGLDLVKHDCVFGTDLDLNEITYVSEVLSQVNRSLVYSISPGTSVTPALAKEVSGLVNMYRITGDDWDSWGDVKSHFNISRDLSAANMIGAKGFKGKSWPDLDMLPFGWLTDPGANDGPHRGSKLTLVEKRTQMTLWAFAKSPLMYGGDVREIDSATYDIITNPTLLEINHFSSNNMEFPYNPSLKKRHKGKPKRSKKGKKPTLSLGLTSCTESEASGWIVENLNQPLERICWKGSLENNPNPFCVQKRELQQHTLDGESKYQEEFRGKHQFFAANQMRFCLDGSSKQKTTSQEIQRVSFSPCKMHSNQIWELTPNGTLLNSYNGLCATVNYIEENVDSNEVRSWIATGRNGEVYMSFFNLSDQQNTTITIYAKTSFVSNVLTDKRINSCQGKEVWSGKDVVTTQGVIKMDVEAHGCALFVLNCK* 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g1012 638 CDD GH27 38 383 IPR002241 GO:0004553|GO:0005975
Tpr3g1012 638 Pfam Alpha galactosidase A 209 383 IPR002241 GO:0004553|GO:0005975
Tpr3g1012 638 Pfam Alpha galactosidase A 51 146 IPR002241 GO:0004553|GO:0005975
Tpr3g1012 638 MobiDBLite consensus disorder prediction 399 414 - -
Tpr3g1012 638 CDD RICIN 464 544 IPR000772 -
Tpr3g1012 638 Gene3D - 548 637 IPR013780 -
Tpr3g1012 638 PANTHER ALPHA-GALACTOSIDASE 4 635 - -
Tpr3g1012 638 SUPERFAMILY (Trans)glycosidases 33 384 IPR017853 -
Tpr3g1012 638 PRINTS Glycosyl hydrolase family 27 signature 32 51 IPR002241 GO:0004553|GO:0005975
Tpr3g1012 638 PRINTS Glycosyl hydrolase family 27 signature 126 147 IPR002241 GO:0004553|GO:0005975
Tpr3g1012 638 PRINTS Glycosyl hydrolase family 27 signature 341 362 IPR002241 GO:0004553|GO:0005975
Tpr3g1012 638 PANTHER ALPHA-GALACTOSIDASE/ALPHA-N-ACETYLGALACTOSAMINIDASE 4 635 IPR002241 GO:0004553|GO:0005975
Tpr3g1012 638 MobiDBLite consensus disorder prediction 393 417 - -
Tpr3g1012 638 SUPERFAMILY Ricin B-like lectins 482 562 IPR035992 -
Tpr3g1012 638 SUPERFAMILY Glycosyl hydrolase domain 552 636 - -
Tpr3g1012 638 Pfam Alpha galactosidase C-terminal beta sandwich domain 553 635 IPR041233 -
Tpr3g1012 638 Gene3D Aldolase class I 16 385 IPR013785 -
Tpr3g1012 638 ProSiteProfiles Lectin domain of ricin B chain profile. 494 544 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g1012 Tpr-Chr3 9255782 9259448 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g1012 11 463 Glycoside Hydrolase AT3G26380 63.319 0.0 610
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g1012 - - gmx:100802840 939.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g1012 3 9255782 9259448 Tpr3g1012 3 9255782 9259448 ECH