Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g0829 ATGAAAGGTGGAACGGTTCAGATTAACTGGCACGAAAGTAAACCCGTTTTAACCCTAGATTTCCATCCTCTCTCCGCCACACTCGCCACCGCCGGCGCCGATTTCGACATCAAGTTATGGTCAATTAAACCCTCAGGAGCACAGAAGAAGCTTCCAGAAGTTACTTATGTCAATAGTCTCTCTTATCATAGTTCCGCTGTTAATGTTATTCGCTTCTCTTCTTCTGGTGAACTTTTAGCTTCTGGGTCTGATGGAGGTGAATTGTTAATATGGAAGCTACATTCTACGGATACTGGCCAAACATGGAAGGTTCTTAAGATGTTACGATCTCATATCAAGGACATTATGGACCTAGAGTGGTCTACTGATGCTGCATATATCATATCCGGATCTGTTGATAATTCTTGCATTATATGGGATGTTAACAAAGGAACTAACCTTCAGACATTGGATACCCATGCACACTATGTTCAGGGGGTAGCATGGGACCCTTTAGGGAAGTACATTGCTTCTCTTAGTTCTGATCGGACTTGCCGAATTTACATCAGTAAGCCCCATAAATCAAAGGGCGTTGAGAAAATCAATTACGTTTGCAAGCATGTTATTTCCAAGGCAGAACAGCCATTATTAAAGAATTCTAAGTCCACAAAATATCATCTTTTCCATGATGAAACATTGCCCTCTTTCTTTAGAAGATTAGCTTGGTCTCCAGATGGTTCATTTCTACTTGTGCCTGCAGGTTCTTATAAAATTGGTACTGCATCTGAATCTGTAAATGCAGCTTACATATTTTCCAGAAAAGATCTTTCTCGGCCTGCTATACAGCTTCCTTGTGCAAGCAAAGCTATTGTAGCTGTCCGGTTTTGTCCTATATTTTTTAACCTTAAGGGAACAAATTCAGATGGGTTATTTAAGCTCCCATATCGCATTGTATTTGCTGTGGCCACATTGAATTCATTGTACATCTATGACACTGAGAGCACTTCTCCAATAGCTGTATTTGCTGGTCTTCACTATGCGCCAGTAACAGATATTACCTGGTCACCTGATGCCCGTTATTTGGCATTCTCCTCGCAAGATGGTTTCTGCTCTTTGGTGGAATTTGAAGATGGCGAACTTGGATCACCTTACTATTTATCAAAAGGAAATGTCTCAGACAATGATAGTAAAAGCACCCTGCAGACAGCCAACAACACTGTACTACCAACTGCGAGTGTTGGTGCAGTTGTAGCAGAAAGCAGGAAAACGGAAGCCGAAAAAAATGTTGATGACATGGACATAGAAACATCTAGGGATATTGGTGCAGTCACATCAGAAAGCAGGAAAACTGTAACTCAAGATAAGGCTGAGGACATGATCATTAAGTCAACTGGGAATGTTAGTGCAGTTATAGCAGATAGTAGGAAAAATGAAGCACAGCAGAAAGCTGATGACATGGTCATTGAAGGAGGTACGGCAGATAGTATGAAAAGTGACGAAGAAGAGAAGACTGATGACATGATCATTGAGACAAATGAGACTGCGAATATTGGAGCAGCTCTATTAGATAATAGAAAAACTGAAGATGCTACAGCAAAACAGGTTAGTAGTTCAGGTAGTGTTAATTTTGGAGCTGAAGAAAAGGCTTTGAAACAACCAGTTAATCCAGACAGTAAACAAAATGAAGCAGAAAAGAAGGCAGATAAACCACAATCAACTTTAGATGGCGTAAAATCAAGGCCAGAAGATAAAATAGGGAATCAATTGTCTAGTTCAAAGAACACACCCGTATCAAATAAGTCAGCCAGGAAGCGCATTACTCCTATAGCAATTGATCCATGA 1821 0.4053 MKGGTVQINWHESKPVLTLDFHPLSATLATAGADFDIKLWSIKPSGAQKKLPEVTYVNSLSYHSSAVNVIRFSSSGELLASGSDGGELLIWKLHSTDTGQTWKVLKMLRSHIKDIMDLEWSTDAAYIISGSVDNSCIIWDVNKGTNLQTLDTHAHYVQGVAWDPLGKYIASLSSDRTCRIYISKPHKSKGVEKINYVCKHVISKAEQPLLKNSKSTKYHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKIGTASESVNAAYIFSRKDLSRPAIQLPCASKAIVAVRFCPIFFNLKGTNSDGLFKLPYRIVFAVATLNSLYIYDTESTSPIAVFAGLHYAPVTDITWSPDARYLAFSSQDGFCSLVEFEDGELGSPYYLSKGNVSDNDSKSTLQTANNTVLPTASVGAVVAESRKTEAEKNVDDMDIETSRDIGAVTSESRKTVTQDKAEDMIIKSTGNVSAVIADSRKNEAQQKADDMVIEGGTADSMKSDEEEKTDDMIIETNETANIGAALLDNRKTEDATAKQVSSSGSVNFGAEEKALKQPVNPDSKQNEAEKKADKPQSTLDGVKSRPEDKIGNQLSSSKNTPVSNKSARKRITPIAIDP* 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g0829 606 Pfam WD domain, G-beta repeat 11 41 IPR001680 GO:0005515
Tpr3g0829 606 Pfam WD domain, G-beta repeat 103 140 IPR001680 GO:0005515
Tpr3g0829 606 Pfam WD domain, G-beta repeat 144 181 IPR001680 GO:0005515
Tpr3g0829 606 Pfam WD domain, G-beta repeat 59 92 IPR001680 GO:0005515
Tpr3g0829 606 Gene3D - 184 400 IPR015943 GO:0005515
Tpr3g0829 606 Gene3D - 2 183 IPR015943 GO:0005515
Tpr3g0829 606 ProSiteProfiles Trp-Asp (WD) repeats profile. 108 149 IPR001680 GO:0005515
Tpr3g0829 606 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 108 144 - -
Tpr3g0829 606 PANTHER CHROMATIN ASSEMBLY FACTOR 1 SUBUNIT B 1 606 IPR045145 GO:0006335
Tpr3g0829 606 SUPERFAMILY WD40 repeat-like 13 396 IPR036322 GO:0005515
Tpr3g0829 606 MobiDBLite consensus disorder prediction 521 606 - -
Tpr3g0829 606 SMART WD40_4 327 367 IPR001680 GO:0005515
Tpr3g0829 606 SMART WD40_4 53 92 IPR001680 GO:0005515
Tpr3g0829 606 SMART WD40_4 101 140 IPR001680 GO:0005515
Tpr3g0829 606 SMART WD40_4 2 41 IPR001680 GO:0005515
Tpr3g0829 606 SMART WD40_4 143 182 IPR001680 GO:0005515
Tpr3g0829 606 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 60 95 - -
Tpr3g0829 606 ProSiteProfiles Trp-Asp (WD) repeats profile. 16 50 IPR001680 GO:0005515
Tpr3g0829 606 PRINTS Beta G protein (transducin) signature 108 124 IPR001632 -
Tpr3g0829 606 PRINTS Beta G protein (transducin) signature 127 141 IPR001632 -
Tpr3g0829 606 PRINTS Beta G protein (transducin) signature 164 181 IPR001632 -
Tpr3g0829 606 ProSiteProfiles Trp-Asp (WD) repeats profile. 60 101 IPR001680 GO:0005515
Tpr3g0829 606 MobiDBLite consensus disorder prediction 577 595 - -
Tpr3g0829 606 MobiDBLite consensus disorder prediction 551 575 - -
Tpr3g0829 606 MobiDBLite consensus disorder prediction 468 497 - -
Tpr3g0829 606 ProSitePatterns Trp-Asp (WD) repeats signature. 127 141 IPR019775 -
Tpr3g0829 606 ProSiteProfiles Trp-Asp (WD) repeats profile. 150 181 IPR001680 GO:0005515
Tpr3g0829 606 PANTHER CHROMATIN ASSEMBLY FACTOR 1 SUBUNIT B 1 606 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g0829 25 181 Miscellaneous Gene Families AT5G08390 27.215 8.54e-13 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g0829 K10751 - gmx:547606 877.085
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g0829 3 7835851 7841291 Tpr3g0829 3 7835851 7841291 ECH