Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g0813 ATGATGATGCTGCACCTCCACAACCCTCTTCCTCACTCTCCTCCTTCTTCCTCCTCCTCCTCCTCCGGAAACTCATTATTTCTCCTTGGTAATCATCATTACCATGTAAACAACTGGAAGAGTAGTTGTCAATTGGAAGAAACTGTCAGATTCTTACATAACAATCATAAGAGACACAAGAAATGTTCTCCGATCCGTTCTTCTCTACCTTCTATTGATCAATTGATTAATGCTCGTGTTATATATTCCGTTGCTCCTTCCATGGGCCACAACCAGGAGGCTCATCCAGAATCACATTTTAGAGTTCCTGCAATTGTCAATGCTTTGGAAGAAATGAAACTCACTTCAAAGTTTCGTGGCTCTGAGGTCATTGAACTTCAACATTTTGAGCCTGCCTCGACCGATGACATTGCAAGTGTGCATGCAAGATCCTATGTTTCTGGGCTTGAAAAGGTTATGGATCAAGCTTTGGAGAAGGGTCTTATTGTCATTGATGGTTCTGGACCAACATATGCTACTTCTACTACCTTCCAGGAGTCAATAGTAGCAGCTGGTGCTGGATTAGCCTTAGTTGACTCAGTGGTTGCAGCTTCAAAGATAAACAAAGATTCACCTACTGGTTTTGCTTTGATAAGACCACCAGGACATCACGCTATTCCACAAGGCCCTATGGGCTTCTGCATTTTTGGAAATGTGGCAATTGCGGCTCGTCATGCTCAGCGTGTTCATGGACTGAAGCGTGTGTTTATAATTGACTTTGATGTTCACCATGGAAATGGAACAAATGATGCATTTTATAATGATCCAGATGTATTTTTCCTTTCCTTCCACCAAGACGGAAGCTATCCAGGTACAGGAAAATTTGACGAGGTAGGTGCTGGGGATGGTTTAGGAACCACACTAAATCTGCCTCTTCCTGGAGGTTCTGGCGATACTACAATTAGAACTGTGTTCGATGAAGTTATTGTACCTTGTGCTCAAAGATTTAAACCAGACATCATTCTTGTTTCTGCTGGGTATGACGGCCACGTGTTAGATCCACTAGCTAATCTTCAATTAACAACGGGAACATATTACATGCTTGCGTCCAATATTAAACAACTGGCAAAAGACTTATGCAGGGGTCGATGCGTATTTTTCTTGGAAGGAGGATATAATCTCAAGTCTCTTTCGTATTCAGTGGCAGACACATTTCGTGCTCTTCTTGGGGACAAAAGCTTGGCATCTGAGTTTGATAACCCAAACATTTTGTATGAAGAGCCATCAAAAAAGGTTAAGCAAGCAATTCAGAGGATAAAATGCATTCATTCCTTGTGA 1317 0.4199 MMMLHLHNPLPHSPPSSSSSSSGNSLFLLGNHHYHVNNWKSSCQLEETVRFLHNNHKRHKKCSPIRSSLPSIDQLINARVIYSVAPSMGHNQEAHPESHFRVPAIVNALEEMKLTSKFRGSEVIELQHFEPASTDDIASVHARSYVSGLEKVMDQALEKGLIVIDGSGPTYATSTTFQESIVAAGAGLALVDSVVAASKINKDSPTGFALIRPPGHHAIPQGPMGFCIFGNVAIAARHAQRVHGLKRVFIIDFDVHHGNGTNDAFYNDPDVFFLSFHQDGSYPGTGKFDEVGAGDGLGTTLNLPLPGGSGDTTIRTVFDEVIVPCAQRFKPDIILVSAGYDGHVLDPLANLQLTTGTYYMLASNIKQLAKDLCRGRCVFFLEGGYNLKSLSYSVADTFRALLGDKSLASEFDNPNILYEEPSKKVKQAIQRIKCIHSL* 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g0813 438 PRINTS Histone deacetylase superfamily signature 213 236 IPR000286 -
Tpr3g0813 438 PRINTS Histone deacetylase superfamily signature 247 262 IPR000286 -
Tpr3g0813 438 PRINTS Histone deacetylase superfamily signature 331 341 IPR000286 -
Tpr3g0813 438 PANTHER HISTONE DEACETYLASE 14 61 437 - -
Tpr3g0813 438 Gene3D Histone deacetylase domain 72 437 IPR037138 -
Tpr3g0813 438 PANTHER HISTONE DEACETYLASE 61 437 - -
Tpr3g0813 438 CDD HDAC_classII 95 402 - -
Tpr3g0813 438 SUPERFAMILY Arginase/deacetylase 90 405 IPR023696 -
Tpr3g0813 438 Pfam Histone deacetylase domain 95 400 IPR023801 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g0813 Tpr-Chr3 7663223 7667735 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g0813 - - cam:101515579 708.368
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g0813 3 7663223 7667735 Tpr3g0813 3 7663223 7667735 ECH