Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g0742 ATGGGAGAACGAAAGCGAATTCCTCTTGGAATCTTTGCACTTCTCTTTTTCGTCATTTCTACCTCTTCGTTACATCTTCTCCATGCTTCCGATGATATCTATGACGCTACCTTCTACGAATCATTTGATGAAGATTTTGATGGCCGTTGGATTGTTTCCGAGAAGGATGAGTACAACGGTGTCTGGAAGCATGCAGCGAATGAGGGGCATGAAGATTACGGGCTTCTTGTCAGTGAGAAAGCAAGGAAATATGCTATAGTCAAAGAACTTGATGAGCCTGTGATTCTTAAGGATGAATCAGTTGTTCTCCAGTTTGAGACTCGCCTACAGAAGGGCCTTGAATGCGGTGGTGCATATCTAAAGTATCTTCGACCACAGGAGGCCGGTTGGAAACCGAAGGAATTTGACAACGATTCTCCATATTCTATAATGTTTGGTCCTGACAAGTGTGGGGCCACAAACAAGGTGCACTTCATTTTCAAGCATAAGAATCCTAAGAGTGGGGCGTATGTTGAACACCATCTCAAGTTTCCTCCATCTGTTCCTTCTGACAAGCTATCTCACGTGTACACTGCTATTTTAAAACCTGACAATGAGTTGCAAATTTTGATTGACGGGGAACAGAAGAAAAAGGCAAATTTCTTATCATCTGAGGATTTTGAGCCTGCTCTTATCCCTCCCAAGACAATCCCAGATCCTGATGATAATAAACCTGAGGACTGGGACGAGAGAGAGAAAATTCCAGACCCAAGTGCAGTAAAGCCAGATGACTGGGATGAGGATGCACCCTTGGAAATTGTTGATGAAGAAGCTGAGAAACCTGAAGGATGGTTGGATGATGAGCCTGAGGAGATAGATGACCCTGAGGCTACAAAACCAGAAGATTGGGACGATGAGGAGGATGGTGAATGGGAAGCCCCAAAGGTTACTAACCCAAATTGTGAAACAGCCCCTGGTTGTGGTGAATGGAAAAGGCCAATGAAGAAGAATCCAGCATATAAGGGAAAATGGCATGCCCCCCTTATTGAAAACCCAGCTTATAAGGGTATATGGAAGCCTCAGGACATTCCCAACCCTGCTTACTTTGAACTTAAAAAACCTGATTTTGAACCTATTGCTGCTATTGGTATTGAGATTTGGACAATGCAGGATGGCATATTGTTTGACAATATTTTGATAGCTAAAGATGATAAGATTGCCGCATCATACAGGGAGACTACATGGAAGCCCAAGTTTATTATTGAGAAAGAAAAACAGAGGCAAGAATCGGATACTGGATCAAGTGGTCTTGCAATCATCCAAAAGAAGGTGTTTGACCTGTTATACAAGTTCGCAGACATTCCTTTCCTGAGTGCCTACAAGTTTGAAATACGTAATCTCATTGAAAAGGGTGAATCGCAGCCGAATCTCACTGTCGGAATTCTTGTAGCCGTTGTGGTTCTTATCGTGACAATTTTCCTCAATATTATATTCGGTGGGAAGAAAAAGCCTGCAAGAGTGGAGAAGAAGACAAAAACACCAGCTGCAGAAACTTCCACTAACCAAGGCAGTGCAGAGAATGAAGAAAACAAAGAGGAGGAAACATCCAAGGGTCCACGTCGGAGGGTAAAGCGAGATAATTGA 1623 0.4313 MGERKRIPLGIFALLFFVISTSSLHLLHASDDIYDATFYESFDEDFDGRWIVSEKDEYNGVWKHAANEGHEDYGLLVSEKARKYAIVKELDEPVILKDESVVLQFETRLQKGLECGGAYLKYLRPQEAGWKPKEFDNDSPYSIMFGPDKCGATNKVHFIFKHKNPKSGAYVEHHLKFPPSVPSDKLSHVYTAILKPDNELQILIDGEQKKKANFLSSEDFEPALIPPKTIPDPDDNKPEDWDEREKIPDPSAVKPDDWDEDAPLEIVDEEAEKPEGWLDDEPEEIDDPEATKPEDWDDEEDGEWEAPKVTNPNCETAPGCGEWKRPMKKNPAYKGKWHAPLIENPAYKGIWKPQDIPNPAYFELKKPDFEPIAAIGIEIWTMQDGILFDNILIAKDDKIAASYRETTWKPKFIIEKEKQRQESDTGSSGLAIIQKKVFDLLYKFADIPFLSAYKFEIRNLIEKGESQPNLTVGILVAVVVLIVTIFLNIIFGGKKKPARVEKKTKTPAAETSTNQGSAENEENKEEETSKGPRRRVKRDN* 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g0742 540 MobiDBLite consensus disorder prediction 217 312 - -
Tpr3g0742 540 Gene3D Calreticulin/calnexin, P domain 223 367 IPR009033 GO:0005509|GO:0005515
Tpr3g0742 540 SUPERFAMILY P-domain of calnexin/calreticulin 224 363 IPR009033 GO:0005509|GO:0005515
Tpr3g0742 540 MobiDBLite consensus disorder prediction 261 304 - -
Tpr3g0742 540 MobiDBLite consensus disorder prediction 497 540 - -
Tpr3g0742 540 ProSitePatterns Calreticulin family repeated motif signature. 285 297 IPR018124 GO:0005509
Tpr3g0742 540 Gene3D - 38 403 - -
Tpr3g0742 540 ProSitePatterns Calreticulin family signature 2. 143 151 IPR018124 GO:0005509
Tpr3g0742 540 PANTHER CALRETICULIN AND CALNEXIN 11 196 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Tpr3g0742 540 PANTHER CALRETICULIN AND CALNEXIN 197 540 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Tpr3g0742 540 Pfam Calreticulin family 38 393 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Tpr3g0742 540 MobiDBLite consensus disorder prediction 519 540 - -
Tpr3g0742 540 ProSitePatterns Calreticulin family signature 1. 108 123 IPR018124 GO:0005509
Tpr3g0742 540 MobiDBLite consensus disorder prediction 232 260 - -
Tpr3g0742 540 PRINTS Calreticulin signature 110 128 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Tpr3g0742 540 PRINTS Calreticulin signature 139 155 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Tpr3g0742 540 PRINTS Calreticulin signature 237 250 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Tpr3g0742 540 PRINTS Calreticulin signature 285 307 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Tpr3g0742 540 PRINTS Calreticulin signature 342 361 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Tpr3g0742 540 PRINTS Calreticulin signature 374 394 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Tpr3g0742 540 PANTHER - 197 540 - -
Tpr3g0742 540 PANTHER - 11 196 - -
Tpr3g0742 540 SUPERFAMILY Concanavalin A-like lectins/glucanases 36 261 IPR013320 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g0742 Tpr-Chr3 7102467 7106140 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g0742 11 540 Miscellaneous Gene Families AT5G61790 72.744 0.0 774
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g0742 K08054 - gmx:100810595 892.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g0742 3 7102467 7106140 Tpr3g0742 3 7102467 7106140 ECH