Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g0638 ATGTGGTTTCTTGGTTGGAAAGGACCATCCGGATTCTCAGCTTCATCAACTGCCGAACAAGTCACTCATGGAATTCATGAAACCACTCTCACTGCAATCATCACAGGTGCATCAAGTGGTCTTGGATTGGAAACAACTAGGGTTCTTGCTTTGCGTGGTGTTCATGTTGTTATGGCAGTGAGGAATGTGAAAAATGGATTGAGTATTAAAGAAACATTACTTGAGGAAATTCCTACCGCTAAAATTGATGTTTTTGAGTTAGATCTTAGCTCTTTAGCATCTGTTAGGAAATTTGCAGCAGATTTTAATTCCTCTGGTCTTCCACTCAATATTCTAATTAACAATGCAGGGGTGATGGCTACTCCATTCTTGCTTTCTCAAGACAATATTGAATTGCAGTTTGCAACCAATCATTTAGGCCATTTTCTGCTTACAAACCTTTTATTAGAGACTATGAAAAAAACTGTAAAGGAATGCAACCGGGAAGGAAGGATAGTTATTGTATCATCAGAGGCTCACAGATTTGCATATAGTGAAGGGATTCGTTTTGATAAGATCAACAATGAATCAGAATACAGCAGTTATTTTGCTTATGGACAATCGAAGCTTGCGAATATTTTGCATGCCAATGAGCTTGCAAGGCGCTTGAAGGAAGAAGGAGTGCAAATAACAGTTAACTCCCTTCATCCTGGTACAATTGTTACAAATATTCTGCGGCATCATGGTTATTTTAATGCCGTTGCTAATATGGTGGGCAAGTACTTCCTTAAAAATGTGCAACAGGGAGCTGCAACTCAATGTTACCTTGCATTACATCCACGAGTAAATGGAATATCTGGCGAGTACTTTGCGGATAGCAATAAGGCAAGCCCGACCACTTTAGCTAAAGATAAAGAGTTGGCGCAAAAACTATGGGAATTAAGTGTAAGTTTGTCTAATACAAAGTAG 948 0.3903 MWFLGWKGPSGFSASSTAEQVTHGIHETTLTAIITGASSGLGLETTRVLALRGVHVVMAVRNVKNGLSIKETLLEEIPTAKIDVFELDLSSLASVRKFAADFNSSGLPLNILINNAGVMATPFLLSQDNIELQFATNHLGHFLLTNLLLETMKKTVKECNREGRIVIVSSEAHRFAYSEGIRFDKINNESEYSSYFAYGQSKLANILHANELARRLKEEGVQITVNSLHPGTIVTNILRHHGYFNAVANMVGKYFLKNVQQGAATQCYLALHPRVNGISGEYFADSNKASPTTLAKDKELAQKLWELSVSLSNTK* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g0638 315 CDD retinol-DH_like_SDR_c_like 31 305 - -
Tpr3g0638 315 Gene3D - 28 315 - -
Tpr3g0638 315 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 2 311 - -
Tpr3g0638 315 Pfam short chain dehydrogenase 31 177 IPR002347 -
Tpr3g0638 315 PANTHER RETINOL DEHYDROGENASE 2 311 - -
Tpr3g0638 315 PRINTS Glucose/ribitol dehydrogenase family signature 31 48 IPR002347 -
Tpr3g0638 315 PRINTS Glucose/ribitol dehydrogenase family signature 107 118 IPR002347 -
Tpr3g0638 315 PRINTS Glucose/ribitol dehydrogenase family signature 157 173 IPR002347 -
Tpr3g0638 315 PRINTS Glucose/ribitol dehydrogenase family signature 198 217 IPR002347 -
Tpr3g0638 315 PRINTS Glucose/ribitol dehydrogenase family signature 221 238 IPR002347 -
Tpr3g0638 315 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 31 287 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g0638 Tpr-Chr3 6262174 6265136 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g0638 33 291 Acyl Lipid Metabolism Gene Families AT3G55290 27.273 1.45e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g0638 - K19329 gmx:100785176 518.079
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g0638 3 6262174 6265136 Tpr3g0638 3 6262174 6265136 ECH