Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g0568 ATGGAAAGGCTAACACAACTCATTTCAATGCTTCCCCTGTTTTTCCTTCTTCTTCCATCTTTATCCTTTGCTGGTCATGACTATGGCCAAGCACTTAGCAAAAGCATTATGTTCTTTGAAGCTCAAAGATCTGGTGTTCTTCCTCATAACCAGAGAGTTTCATGGAGATCTCATTCTGGTCTTCAAGATGGTAAAGCAAGTGGGGTAGATCTAGTGGGTGGATACTATGATGCAGGTGATAATGTAAAATTTGGATTACCAATGGCGTTTACTGTTACAATGATGTCATGGAGCATTATTGAATATGGTAAACAAATGGCTTCTAGTGGTGAACTTGGTCATGCCATGGAAGCTGTGAAATGGGGTACTGATTATTTCATCAAAGCTCATCCTGAACCTAATGTTCTCTATGGAGAGGTAGGAGATGGGAACACTGACCATAAGTGTTGGCAAAGGCCGGAGGATATGACCACTGACCGTCATGCTTACAAGGTTGATCCAAGTAATCCCGGGTCGGATCTTGCCGGAGAAACCGCCGCCGCTATGGCTGCTGCTTCCATTGTATTCCGCCGTTCTAATCCTGCTTATTCACATGAACTCCTCCGTCATGCCTATGAGTTGTTTGATTTTGCGGATAAATACAGAGGCAAATATGACAGCAGCATCACAGTTGCACAGAAGTACTACAGATCCATCAGTGGATACAATGATGAATTGCTTTGGGCTGCTGCATGGTTGTATCAAGCATCTAACAACCAATATTACTTGGATTACCTTGGTAGAAATGGTGACTCCATGGGTGGAACTGGTTGGCAAATGACTGAATTCAGTTGGGATGTTAAGTATCCCGGAGTTCAAACTTTAGTTGCGAAGTTCCTGTTGCAAGGAAAAGCTGGAGCTCATGCACCAGTGTTTGAAAAATATCTGCAAAAGTCCGAGTATTTCATGTGTTCATGCCTTGGAAAAGGTTCTCACAATGTTCAGAAGACACCTGGTGGACTCATATACCGCCAAAGATGGAACAACTTGCAGTTTGTCACAAGTGCTTCCTTTTTAGCCACTGTCTATTCTGACTACCTTGTTTCTTCTGGTAGAAACTTGAGATGTGATTCCGGCAATGTCCCTTCTTCCGAGCTTCTCTCATTCGCAAAGTCTCAGGTGGACTACATTCTTGGAGACAACCCAAGAGCTACAAGTTACATGGTGGGATATGGAAACAATTTCCCTCAAAGGATTCACCACAGAGGTTCCTCCATTGTTTCAATCAAGGCTAATCCTTCATTTGTCAGCTGCTTTGGAGGTTACAATACTTGGTTTAGTAGCAAAAGGAGCAACACTAATCAACTTACTGGTGCTATTGTTGGTGGACCTGATGCATATGATGACTTTGCTGATGAAAGAAAGAACTATGAACAAACAGAACCAGCAACCTACAACAATGCTCCTCTTTTAGGTGTTCTTGCACGACTCAGTGGCGGTCATGGTGGCTACAACCAGCTCCTTCCAGTTGTTGTTCCAGCTCCTAGACCCGTTGTTACCAAGCCACATTTATCTCCCAAACCAAGGATAACTCCATCCCCAGCGTCAAAGTCAGGCCCAATTTCCGTTGAACAGAAAATGACCAAATCTTGGGTTGCCGGTGGCAGAACATACTATAGATATTCAACAATTGTGACTAACAAATCAACCAAGAATCTCAAGTCTCTCAATCTTTCGATATCCAAGCTTTATGGTCCACTTTGGGGACTCACAAAGTCTGGTGATTCATACACATTCCCAGCATGGATTAATGCTTTATCAGCAGGTAAAAGCCTCGAATTTGTCTACATCCATTCTACCACTCCCGCAGATGTCTCAGTCGCAAACTACTTGTTGGCCTGA 1881 0.4338 MERLTQLISMLPLFFLLLPSLSFAGHDYGQALSKSIMFFEAQRSGVLPHNQRVSWRSHSGLQDGKASGVDLVGGYYDAGDNVKFGLPMAFTVTMMSWSIIEYGKQMASSGELGHAMEAVKWGTDYFIKAHPEPNVLYGEVGDGNTDHKCWQRPEDMTTDRHAYKVDPSNPGSDLAGETAAAMAAASIVFRRSNPAYSHELLRHAYELFDFADKYRGKYDSSITVAQKYYRSISGYNDELLWAAAWLYQASNNQYYLDYLGRNGDSMGGTGWQMTEFSWDVKYPGVQTLVAKFLLQGKAGAHAPVFEKYLQKSEYFMCSCLGKGSHNVQKTPGGLIYRQRWNNLQFVTSASFLATVYSDYLVSSGRNLRCDSGNVPSSELLSFAKSQVDYILGDNPRATSYMVGYGNNFPQRIHHRGSSIVSIKANPSFVSCFGGYNTWFSSKRSNTNQLTGAIVGGPDAYDDFADERKNYEQTEPATYNNAPLLGVLARLSGGHGGYNQLLPVVVPAPRPVVTKPHLSPKPRITPSPASKSGPISVEQKMTKSWVAGGRTYYRYSTIVTNKSTKNLKSLNLSISKLYGPLWGLTKSGDSYTFPAWINALSAGKSLEFVYIHSTTPADVSVANYLLA* 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g0568 626 Pfam Glycosyl hydrolase family 9 28 487 IPR001701 GO:0004553|GO:0005975
Tpr3g0568 626 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 3. 463 481 IPR033126 -
Tpr3g0568 626 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 389 415 IPR018221 -
Tpr3g0568 626 SMART CBM49_2 534 614 IPR019028 GO:0030246
Tpr3g0568 626 Pfam Carbohydrate binding domain CBM49 534 611 IPR019028 GO:0030246
Tpr3g0568 626 PANTHER ENDO-1,4-BETA-GLUCANASE 14 592 - -
Tpr3g0568 626 SUPERFAMILY Six-hairpin glycosidases 25 502 IPR008928 GO:0005975
Tpr3g0568 626 Gene3D - 25 493 IPR012341 GO:0005975
Tpr3g0568 626 PANTHER ENDOGLUCANASE 14 592 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g0568 Tpr-Chr3 5605488 5611739 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g0568 21 626 Glycoside Hydrolase AT1G64390 78.053 0.0 997
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g0568 K01179 - gmx:100801949 1094.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g0568 3 5605488 5611739 Tpr3g0568 3 5605488 5611739 ECH